PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G051300.1.p
Common NamePRUPE_ppa024234mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 255aa    MW: 29674.3 Da    PI: 9.1489
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G051300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-182370148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd ll ++vk++G g+W+++ar  g++R +k+c++rw +yl
  Prupe.1G051300.1.p 23 KGPWTAEEDGLLTEYVKLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 70
                        79********************************************97 PP
2Myb_DNA-binding51.91.8e-1676120147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Prupe.1G051300.1.p  76 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120
                         7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.3521870IPR017930Myb domain
SuperFamilySSF466893.83E-3020117IPR009057Homeodomain-like
SMARTSM007178.6E-152272IPR001005SANT/Myb domain
PfamPF002493.2E-162370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-232477IPR009057Homeodomain-like
CDDcd001674.48E-102570No hitNo description
PROSITE profilePS5129423.74371125IPR017930Myb domain
SMARTSM007171.4E-1475123IPR001005SANT/Myb domain
PfamPF002491.0E-1376120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-2478124IPR009057Homeodomain-like
CDDcd001671.13E-980121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MYLGMMAGHH MGWGIIEEEG WRKGPWTAEE DGLLTEYVKL HGEGRWNSVA RLAGLKRNGK  60
SCRLRWVNYL RPELKRGQIT PHEESIILEL HARWGNRWST IARSLPGRTD NEIKNYWRTH  120
FKKKAKVPSD ASEKAKNRFL RRKQFHNQQH QQQQQHLQVN QEEVKRILAL LDENNDTKMP  180
CFWPQVKQGM ETISTYPHHT TDHQEQCFNY SMLNGNVSVP EASNNEDNFL WDGLWNLNDV  240
HGNFNSTCAT GKAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-262312527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G051300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3239211e-114KT323921.1 Morus alba var. multicaulis isolate LOC122724841 transcription factor GAMYB-like protein (MYB3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007221842.10.0myb-related protein 305
TrEMBLM5XC730.0M5XC73_PRUPE; Uncharacterized protein
STRINGEMJ230410.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-85myb domain protein 305