PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G065300.2.p
Common NamePRUPE_ppa000479mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 1095aa    MW: 121465 Da    PI: 6.8977
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G065300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.83.5e-22136237199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   
  Prupe.1G065300.2.p 136 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI-- 223
                         99*****************************9445444.38************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         ++++++l+++++r+
  Prupe.1G065300.2.p 224 RDEKQQLLLGIRRA 237
                         5688889****997 PP
2Auxin_resp116.42.4e-38262345183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+v+YnPras+seFv++++k+ ka   +++s+GmRf+m+fete+s +rr++Gt++g+sdld+vrW+nS+Wr+L+
  Prupe.1G065300.2.p 262 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAACgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDSVRWKNSQWRNLQ 345
                         79****************************9887766*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-43125265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-41127251IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-18135227No hitNo description
PROSITE profilePS5086311.899136238IPR003340B3 DNA binding domain
PfamPF023623.0E-20136237IPR003340B3 DNA binding domain
SMARTSM010191.9E-22136238IPR003340B3 DNA binding domain
PfamPF065077.1E-34262345IPR010525Auxin response factor
PROSITE profilePS5174521.97210261094IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1095 aa     Download sequence    Send to blast
MKPPANGAGA AAANGPSNSC EGGENVKIIN PELWQACAGP LVNLPPAGTH VVYFPQGHSE  60
QVAASMKKDV DGQIPNYPNL PSKLLCLLHN VTLHADPETD EVYAQMTLQP VPSFDKDALL  120
RSDLALKSNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD  180
LHDTVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKQQL LLGIRRANRQ  240
PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAACGNQ  300
LSLGMRFRMM FETEESGTRR YMGTITGISD LDSVRWKNSQ WRNLQVGWDE STAGERRNRV  360
SMWEIEPVTA PFFICPPPFF RSKRPRQPGM PDEESSDLDN LFKRTMPWLG DDMCMKDPQV  420
LPGLSLVQWM NMQQNSSAGN SIQPNYMHSF PGSALQNLAG ADLSRQLGMS GPQIPQLSNL  480
QFNAQRLPQQ AQQLDQLQKL PSTMNPLASM IQRQQQLGDI TQQPRQNSFN QSLPSSQVQS  540
QLLQPQTLVQ TNSILQQQSS SQNHLQRNLP QNLQQHQQQQ QQQLHQQQQQ HQQQQQQHQQ  600
QQQHQQQIAG QNQQQFQSQL PDQINQQLQH LSDNQLQLQL LQKLQQQQQS LLTQQAQQQP  660
AQLIQLQDQQ RQLLDVSQSF SRPLTPTQMQ EMPQMAPTSH PHSRTMPQQL TKNNNSQTNV  720
RFSQPPQQPK LQQQQPVMVP EMSGHMGLHP TPTTNQLSTA VSNVMTGGAG AGQSGITDEV  780
PSCSNSPSTN NCPSLIQPLM NNRAHRNSFV GEDMAQSATT ILSPSAIETM PSNGNLLKDF  840
QLKSDVKPSV NIASNQSQGI LTAQTYLNSA AVQTDYLDTS SSTTSVGLSQ NDVNLQQNNA  900
PLSFNPQSML FREASQEGEV QADHRNNVSY GSNIDGQLGI PLNPDPMLAK GTVALGKDFS  960
NNLSSGGMIG NYENAKDAQQ ELSSSMVSQS FGVPDMAFNS IDSTINDSGF LDTGPWAPAP  1020
QFQRMRTYTK VYKRGAVGRS IDIARYSGYG ELKQDLARRF GIEGQLEDRG RVGWKLVYVD  1080
HESDVLLVGD DPWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1702136643388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.6890.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G065300.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007225425.10.0auxin response factor 19
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLM5XL240.0M5XL24_PRUPE; Auxin response factor
STRINGEMJ266240.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19