PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G074400.2.p
Common NamePRUPE_ppa010972mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 229aa    MW: 25958.9 Da    PI: 8.0264
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G074400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-135496754
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          Er+RR+++N++++ Lr ++Pk +      K++Ka+i + A++YI++L
  Prupe.1G074400.2.p 54 VSERNRRKKLNERLFALRAVVPKiS------KMDKASIIKDAIDYIQEL 96
                        57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-1747111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.2794796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.34E-1350101No hitNo description
Gene3DG3DSA:4.10.280.109.7E-1753112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1453102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-115496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDNIGDEYKH YWETNMFLQS EELDSWGLDE AFSGYYDSSS PDGGASSMAS KNIVSERNRR  60
KKLNERLFAL RAVVPKISKM DKASIIKDAI DYIQELHEQE RRIQTEIGEL ESGRSKKNLG  120
SEFDQELPVL LRSKKKKIEQ LYDSGGSRTS TIEVLELRVT YMGEKTVVAS LTCSKRTDTM  180
VKLCEVFESL KLKIITANIT AFSGRVLKTV FIEVIKLTLL NCLLLILK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G074400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007223913.21e-156transcription factor bHLH35
SwissprotQ2HIV92e-86BH035_ARATH; Transcription factor bHLH35
TrEMBLM5XG551e-165M5XG55_PRUPE; Uncharacterized protein
STRINGEMJ251121e-166(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-76bHLH family protein