PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G075500.4.p
Common NamePRUPE_ppa023964mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HB-PHD
Protein Properties Length: 615aa    MW: 69742.3 Da    PI: 9.6354
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G075500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.63.3e-114755181053
                         HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
            Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                         + +e L ++F +n  ps++ +e L+k+lgL+ ++V+ WF+N R+
  Prupe.1G075500.4.p 475 KAVEKLRQAFSENELPSRDVKENLSKELGLDPEKVSKWFKNARY 518
                         67899*************************************97 PP
2PHD414.3e-14233288151
                         SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                 PHD   1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                         +C+ C+ +++  +++++lCd +C+++fH+kCl+++l++e++p+g   w+C+ C++k
  Prupe.1G075500.4.p 233 FCAKCKLNEAfpDNDIILCDgTCNSAFHQKCLDPPLDTENIPRGdqGWFCKFCECK 288
                         699999855455********56*********************999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.97E-15225291IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.1E-12229288IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.389231288IPR019787Zinc finger, PHD-finger
SMARTSM002495.8E-9233286IPR001965Zinc finger, PHD-type
CDDcd155041.15E-29233285No hitNo description
PfamPF006283.3E-11233288IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590234285IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.606.3E-13458517IPR009057Homeodomain-like
PROSITE profilePS5007112.6463523IPR001356Homeobox domain
SMARTSM003893.5E-9465527IPR001356Homeobox domain
SuperFamilySSF466891.75E-10466528IPR009057Homeodomain-like
CDDcd000868.42E-9471518No hitNo description
PfamPF000461.2E-8474518IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MHGLGKKSSL KESGKPRYSN SVAKLISSPK FRKGGKVSHV KKIKPKSKTI IASCLSKKRG  60
ADSTRKGSRN NGTDKKLMSR KGVHKVHDTN SSKKLSSVKL QDEKFSFKDS DKKGENADGE  120
VKLRIKRRRK KKLQKDKVEL DETSRLQRRT RYLLIKIKLE QNLIDAYSGE GWKGQSREKI  180
KPEKELQRAK KQILKCKLGI RDAIHQLYSL SSVGSMADSV IAADGSVYHE HIFCAKCKLN  240
EAFPDNDIIL CDGTCNSAFH QKCLDPPLDT ENIPRGDQGW FCKFCECKME ILEVVNAHLG  300
TCFSNDCGWQ DVFKEEAAFP DGENSLLNPD EEWPSDDSED DDYNPERNEN SCSFSMGGTD  360
DNASDDELST DVSVGSDEST DGEVVSGRRQ RRRVDYKKLY DEMFGKDGPL HEQISDDEDW  420
GPVKRKRREK ESDAASTLMT LYESERIPDV TPTEVKNKHP PDTQVRRACF RIPRKAVEKL  480
RQAFSENELP SRDVKENLSK ELGLDPEKVS KWFKNARYLA LKTRKDGMEL SDNVSLKKLL  540
KARTKEKKAN LIAEGGCRVA ELEMERLCKA KGRLENMRQK LLKFQNAKAK KSNKSLLHEQ  600
SVIYVPIAEL KDKV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131KRRRKKK
2127132RRKKKL
3387392RRQRRR
4424429RKRREK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G075500.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020410181.10.0pathogenesis-related homeodomain protein isoform X2
SwissprotP487851e-152PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A251QTS90.0A0A251QTS9_PRUPE; Uncharacterized protein
STRINGEMJ257220.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-153pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]