PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G106500.2.p
Common NamePRUPE_ppa000690mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 635aa    MW: 69958.7 Da    PI: 8.828
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G106500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.64.8e-40147224178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cqve+C+adls+ak+yhrrhkvC++hska+++ v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Prupe.1G106500.2.p 147 VCQVEDCKADLSHAKDYHRRHKVCDMHSKATKARVGNVLQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 224
                         6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.2E-32144209IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.761145222IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-37146227IPR004333Transcription factor, SBP-box
PfamPF031101.0E-28148221IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MEAFGGSARN FYGPMVSDLK AVGKKSLEWD LNDCKWDGDL FTASPLNSIP SDFRSRQLFP  60
VQPETPSNAG LSNSSSSGSD DISPGNEKGK RELEKRRRAT FVENEELNNE AGSLNLKLGE  120
QAYPIMEGEV QTGKKTKIVG TTLNRAVCQV EDCKADLSHA KDYHRRHKVC DMHSKATKAR  180
VGNVLQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KTHPDPVVNG GSLNDERGSS  240
YLLISLLRIL SNMHSNSSDQ TKDQDLLSHL LRSLANLAGT VDGRSISALL PGSQGLLNSG  300
PSVQTAQKVP DTVSNGCEPS RPSVSASKRD DCVNLEDPLR PIRQCTTVPA SDLLQKRISS  360
VDADHRSLQV VSGLQAAKPL PSRDSVPSKS VAPDATMGRM QLNGIDLNNT YDDSQDYLEN  420
LGSSHSPVNP GTVSLGFPLW MQQESQKSSP PQTSGTSDST STQSPSTSSG EGQSRTDRIV  480
FKLFGKDPND LPFVLRSQIL DWLSHSPSDI ESYIRPGCII LTIYLRLEKS TWEELCCHLG  540
SNLKRLLHAA NDPFWTTGWV YTRVQQNVAF TYNGQVVLDT PLPLKSHKHC RISYVKPIAV  600
SLSERAQFVV KGFNLSRSTT RLKIMVLAAA SFHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-291472211084squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G106500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223098e-64KJ622309.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007225395.10.0squamosa promoter-binding-like protein 1
TrEMBLA0A251QVH70.0A0A251QVH7_PRUPE; Uncharacterized protein
STRINGEMJ265940.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.11e-67squamosa promoter-binding protein-like 12