PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G138500.1.p
Common NamePRUPE_ppa015692mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YB
Protein Properties Length: 164aa    MW: 18552.4 Da    PI: 5.695
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G138500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1628.4e-5124120197
               NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                         ++eq+++lPianv+rim+++lP nakisk+aket+qecvsefisfvtseas+kc++e+rkt+ngdd+ wal+ lGfedy  pl+ +l++yr
  Prupe.1G138500.1.p  24 MKEQEQLLPIANVGRIMRQILPPNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDVSWALGALGFEDYTGPLRRFLHRYR 114
                         589**************************************************************************************** PP

               NF-YB  92 elegek 97 
                         e ege+
  Prupe.1G138500.1.p 115 EQEGER 120
                         ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.4E-5119149IPR009072Histone-fold
SuperFamilySSF471131.07E-3827146IPR009072Histone-fold
PfamPF008081.6E-273094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.4E-165876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.4E-167795No hitNo description
PRINTSPR006157.4E-1696114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MVDNNNNNIG ASGAANHDED GAMMKEQEQL LPIANVGRIM RQILPPNAKI SKEAKETMQE  60
CVSEFISFVT SEASEKCRKE RRKTVNGDDV SWALGALGFE DYTGPLRRFL HRYREQEGER  120
ISSSAANNNN NNNENNQDKD NNNPEDQQQR KLLNHPHIQR PNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-4224115192Transcription factor HapC (Eurofung)
4g92_B4e-4224115192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G138500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224115.11e-119nuclear transcription factor Y subunit B-1
SwissprotO822486e-52NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLM5XH851e-117M5XH85_PRUPE; Uncharacterized protein
STRINGEMJ253141e-118(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-53nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]