PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G139500.1.p
Common NamePRUPE_ppa005056mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 480aa    MW: 50406.2 Da    PI: 8.3535
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G139500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.3e-114973327
                        S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                        +  C++++rtG+C yG+rC+++H++
  Prupe.1G139500.1.p 49 ETDCSYYLRTGICGYGSRCRYNHPR 73
                        568********************96 PP
2zf-CCCH39.59.5e-1395119327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C++++rtGtCk+G++Ck++H++
  Prupe.1G139500.1.p  95 QPVCQYYMRTGTCKFGASCKYHHPK 119
                         689********************96 PP
3zf-CCCH36.39.8e-12140165227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+++ +tG+Ck+G++CkF+H++
  Prupe.1G139500.1.p 140 GERECSYYVKTGQCKFGATCKFHHPQ 165
                         789*********************97 PP
4zf-CCCH38.91.5e-12302328127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++++rtG Ck+G++C+++H+p
  Prupe.1G139500.1.p 302 PGQPECQYYMRTGDCKFGSSCRYHHPP 328
                         5789*********************97 PP
5zf-CCCH34.43.6e-11350374327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +lC ++a+ G Ck+G+ CkF H++
  Prupe.1G139500.1.p 350 APLCTHYAQRGVCKFGPACKFDHPM 374
                         68*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1554674IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-64673IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-64875IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-94973IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-55273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.93992120IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-792119IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-1095119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-695119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-597118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549138166IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5138165IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9140165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6141166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4144164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.37301329IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6301328IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-10303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6305329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4307328IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6347374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.765347375IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8350374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6351377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-5352372IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MERYGRTTEG SQSDPSPEWT VPGPETGLEE SMWQLGLGPG ESYPERPNET DCSYYLRTGI  60
CGYGSRCRYN HPRDRSAVTG AARPGGLEYP ERAGQPVCQY YMRTGTCKFG ASCKYHHPKQ  120
GGSSGSPVSL NYYGYPLRQG ERECSYYVKT GQCKFGATCK FHHPQPAGIP LPVPSPAPQV  180
SPVPAAPLYQ TVQSPSVSSQ QYGVVFARPP LLPGSYVQSP YGQVLLSPGT IPFPGWSPYQ  240
APASALPSPS TQPGVGSGTL YGMSQLSPSA AAYTGMYQPI PLPSSLGLPT TSQKEHLFPE  300
RPGQPECQYY MRTGDCKFGS SCRYHHPPEV VGPKTTVALS PSGLPSRPGA PLCTHYAQRG  360
VCKFGPACKF DHPMGTLSYS PSASSLADMP VAPYPVGSSI GTLAPSSSSS STELRPELNS  420
GSGKDLVSAR MSSSLSTSSG SVGSTVSKGG ITHLGVQQSA QGSGPSTSSG SSTESHSPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G139500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007222805.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ6NPN31e-164C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLM5XDL40.0M5XDL4_PRUPE; Uncharacterized protein
STRINGEMJ240040.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-151C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]