PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G168700.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 130aa    MW: 14863.4 Da    PI: 9.8254
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G168700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.93.1e-141153345
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        i n+s r++ f kR++g+lKK +EL +LCd+    ii+++++k
  Prupe.1G168700.1.p 11 ITNDSARKTNFRKRKEGLLKKLSELGILCDVSGFAIIYGPDDK 53
                        89*************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.073153IPR002100Transcription factor, MADS-box
CDDcd002661.84E-24285No hitNo description
PRINTSPR004044.9E-5323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-21494IPR002100Transcription factor, MADS-box
PfamPF003193.1E-141153IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MTGKKAKLAW ITNDSARKTN FRKRKEGLLK KLSELGILCD VSGFAIIYGP DDKEPVVWPS  60
NPIAEELLAR FQRIPKVDRC MKMMNQETYL NDRKNKEMEM NIIMSQIQEG KPMNEFGTGE  120
LTGLKQIFH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G168700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021803733.12e-75agamous-like MADS-box protein AGL80, partial
TrEMBLA0A251QYU03e-91A0A251QYU0_PRUPE; Uncharacterized protein
STRINGEMJ225193e-71(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-20AGAMOUS-like 80