PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G168900.1.p
Common NamePRUPE_ppa024403mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 369aa    MW: 40527.4 Da    PI: 4.6562
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G168900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF343.7e-111151343
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        i n+  r+ +f  R++ +lKK +E+ +LCd+ + +i+++++
  Prupe.1G168900.1.p 11 IVNDAARKSSFRMRKACLLKKMSEINTLCDVSAFIIVYGPD 51
                        779999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.708149IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-13160IPR002100Transcription factor, MADS-box
CDDcd002666.04E-23285No hitNo description
SuperFamilySSF554552.35E-20394IPR002100Transcription factor, MADS-box
PfamPF003192.3E-111153IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MARNKVKLAW IVNDAARKSS FRMRKACLLK KMSEINTLCD VSAFIIVYGP DSDEPTVWPD  60
RPLVEQLVAR FQSIPELERW KKMMSQETYL KDRVAKMQEQ IKKIFKKNNE LNTNEILYQS  120
IQKGKSLLAF EDNDLTDLVL SLEDRMKEIQ KRIDYFEKPN PSHPVRIPPE ESGDQSENMS  180
QIEGDFTESL LWYEDLGKQI GNTNGPTNSV RSDRGVPSTA YFGSLTHENE MGLLNWNFGG  240
SNYDGSDLGL AMQIDNSEGQ GNAGSDMGMS MVNYGGITSG IEMGFGMFPY NWNNVAGSTE  300
DNGLATGGSM ADKGSAGSRI DFPPRFLGGN KDGSDSGLPP GLFGGSIAGS VGLPYDVSKS  360
GQNLFSSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G168900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020409802.10.0agamous-like MADS-box protein AGL75
TrEMBLA0A251QYK70.0A0A251QYK7_PRUPE; Uncharacterized protein
STRINGEMJ225200.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-31AGAMOUS-like 80