PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G170500.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 1049aa MW: 113159 Da PI: 4.325

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G170500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0013	20	42	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F++ + rH r H Prupe.1G170500.1.p 20 HVCHKCGWPFPNAHPSARHRRAH 42 79*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	22	42	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1049 aa Download sequence Send to blast
MDSQDLARTH SSGLDSHGVH VCHKCGWPFP NAHPSARHRR AHKRICGTID GYKLAGSEKN 60 THVNDSDDEH SDEERKTPNL VSVRSEDVVF SDAVAEFSDS ASGAGTGEGL ENVRESEINL 120 ERVAKNGLNV IQSLNDGEIT ENTTNQLGAQ ELQGSLSTSN IISMTSSESA LQDDSNHSED 180 DVQPIQFEVL ADASEDSKKT HATDSVIESS LLSAPQEDKI DGITTSNLDG DLPCTVISPN 240 KVVSETAEGV SKLEGTVEMT SDSLRDNEVV PSEKEYTHAY DLYIPQIDPS PEVESVEHVN 300 ASVDTVENKV DTTDRIHFSN SGGLTESSNW EGEGNANVHV LSVPDDTHVV ENPEAMLEGF 360 KNHKEKKLDQ PIFLDSWEQF NDEENDVKRG GSSKPMVKEV PAEEEPSVSH IQIKSTENQR 420 SDEIAAPADA NESLQVNFSE SDTNSLIASS SAAINQTRHL DDLDGNGKDE KCDLSADHSS 480 KGPAEENSVK NPAEIEFNPA ANLPEKGDAG DYEKGIFENC NIIGDSGYHE TENFKLAGDD 540 NSKESTEDFF AKDPVSNLES ASRLSELQVS PVSSSHEVGD AGDYEKDKTE RFDIIGDDGD 600 HEKAEKYVLT GDDYRKVSTE KIVAENSITS LESASSLSEL QANLATNLND DDPGDHDGGE 660 IEKSIISGNE SSEGPVEKNL LVKPTLNLDS AIDLVESKTV AEDAVDGSML KLVDTRHKTL 720 NSSSNSSGVG LNIVSDHGPN AESSQKSSEG CGMKELGLSA LDAESFVPSF TAEDIGSREF 780 HGVSSGLSSQ SFQEESDKNF VKQQLSSPAL DVVDSNSQTD SLEGNWGSVS VLSIQSDAQA 840 VPPTDSQTSV EEKKSRAASE RQHPEKSDMF EAPSFMTLVE PRGVNDQKAT AAEIHTAHNP 900 EQPKPAPLQA GWFPSISHVV NESPGRKKNE EIIAKVTNWS TGKQHTPLKN LLGEAYLENK 960 AKSPTQKESQ APAPQRDDKA VKVKDGGPGA TTVNSILGPE SPTGQASKKE NAKEWNSPAR 1020 YPSDIKSEKK KVKGRPYWAQ FVCCSSVH*

Sequence ? help Back to Top

Protein Sequence Length: 1049 aa Download sequence Send to blast

MDSQDLARTH SSGLDSHGVH VCHKCGWPFP NAHPSARHRR AHKRICGTID GYKLAGSEKN  60
THVNDSDDEH SDEERKTPNL VSVRSEDVVF SDAVAEFSDS ASGAGTGEGL ENVRESEINL  120
ERVAKNGLNV IQSLNDGEIT ENTTNQLGAQ ELQGSLSTSN IISMTSSESA LQDDSNHSED  180
DVQPIQFEVL ADASEDSKKT HATDSVIESS LLSAPQEDKI DGITTSNLDG DLPCTVISPN  240
KVVSETAEGV SKLEGTVEMT SDSLRDNEVV PSEKEYTHAY DLYIPQIDPS PEVESVEHVN  300
ASVDTVENKV DTTDRIHFSN SGGLTESSNW EGEGNANVHV LSVPDDTHVV ENPEAMLEGF  360
KNHKEKKLDQ PIFLDSWEQF NDEENDVKRG GSSKPMVKEV PAEEEPSVSH IQIKSTENQR  420
SDEIAAPADA NESLQVNFSE SDTNSLIASS SAAINQTRHL DDLDGNGKDE KCDLSADHSS  480
KGPAEENSVK NPAEIEFNPA ANLPEKGDAG DYEKGIFENC NIIGDSGYHE TENFKLAGDD  540
NSKESTEDFF AKDPVSNLES ASRLSELQVS PVSSSHEVGD AGDYEKDKTE RFDIIGDDGD  600
HEKAEKYVLT GDDYRKVSTE KIVAENSITS LESASSLSEL QANLATNLND DDPGDHDGGE  660
IEKSIISGNE SSEGPVEKNL LVKPTLNLDS AIDLVESKTV AEDAVDGSML KLVDTRHKTL  720
NSSSNSSGVG LNIVSDHGPN AESSQKSSEG CGMKELGLSA LDAESFVPSF TAEDIGSREF  780
HGVSSGLSSQ SFQEESDKNF VKQQLSSPAL DVVDSNSQTD SLEGNWGSVS VLSIQSDAQA  840
VPPTDSQTSV EEKKSRAASE RQHPEKSDMF EAPSFMTLVE PRGVNDQKAT AAEIHTAHNP  900
EQPKPAPLQA GWFPSISHVV NESPGRKKNE EIIAKVTNWS TGKQHTPLKN LLGEAYLENK  960
AKSPTQKESQ APAPQRDDKA VKVKDGGPGA TTVNSILGPE SPTGQASKKE NAKEWNSPAR  1020
YPSDIKSEKK KVKGRPYWAQ FVCCSSVH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G170500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB218717	0.0	AB218717.1 Prunus mume Pm8 mRNA for hypothetical salt-inducible protein, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020421383.1	0.0	uncharacterized protein LOC18787821
Refseq	XP_020421386.1	0.0	uncharacterized protein LOC18787821
Refseq	XP_020421391.1	0.0	uncharacterized protein LOC18787821
TrEMBL	A0A251QYN0	0.0	A0A251QYN0_PRUPE; Uncharacterized protein
STRING	XP_008222781.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5051	17	19

Link Out ? help Back to Top
Phytozome	Prupe.1G170500.1.p