PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G181300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 375aa    MW: 39699 Da    PI: 7.6132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G181300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309e-10295353655
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...........TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.as........kapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri  ++ +L++l+P+ +          +  k  s a++L +Av++Ik Lq
  Prupe.1G181300.1.p 295 SIAERERRTRISGKLKKLQDLVPNmDKvitdgsykYGLVKQTSYADMLDLAVQHIKGLQ 353
                         689*********************988*******6666666*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.535289352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-9293357No hitNo description
SuperFamilySSF474592.36E-11294365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-10294364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-12295358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-7295353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MYPSTSSSSS QNPMGPGPSA TGLTRYGSAP GSLLTSAVDS VIGAVADREF SALRSQPHLG  60
HYFSGDGHGD DSSLTSSEST FKVNSSNGGT DATKPLIRSY GLNEMANAIG SPTSSSSCSS  120
PSALVRQRSS PAGFLSHLTA PDNNGGFSVT RGAGIYSSQG GTNGGHGHGV TRLKSQLSFT  180
GQDSLSQISE VSENAMEGVS SNNGHHRAMH SYPTTSFGME SWDNTNSIVF SAPPSKRAKN  240
MDGDLFNCLN ALESQFSLPQ TSLEMATVEK LLHIPEDSVP CKIRAKRGCA THPRSIAERE  300
RRTRISGKLK KLQDLVPNMD KVITDGSYKY GLVKQTSYAD MLDLAVQHIK GLQNQVEDLH  360
KDLDNCTCGC KPNT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G181300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226948.20.0transcription factor bHLH128
SwissprotQ8H1025e-96BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A251QZ890.0A0A251QZ89_PRUPE; Uncharacterized protein
STRINGXP_008222661.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-89bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]