PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G195800.1.p

Common Name

PRUPE_ppa010562mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 246aa MW: 28477.8 Da PI: 6.1838

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G195800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.2	4.9e-27	72	163	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ Y++++GF++r++++++s +++ i+ r+fvCskeg+r+e+ + +++r +r+ tr gC+a+l+++ ++ gkw+++ +++eHnHel Prupe.1G195800.1.p 72 DFYEMYGRHMGFTIRNNRTRRSLKDNAIIGREFVCSKEGFRAEKYAT-SQNRVlpSRPATRKGCNAMLRITAKDGGKWVIYGFVKEHNHEL 161 6*******************9****************9988.33333459********************************9 PP FAR1 90 ap 91 +p Prupe.1G195800.1.p 162 NP 163 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-24	72	163	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MMASTSGQGF SPERNYRCWL DETFSSHETA DDELSYTPDV DNNLIETSSQ DFSLTLEPVI 60 GMEFESAEDA RDFYEMYGRH MGFTIRNNRT RRSLKDNAII GREFVCSKEG FRAEKYATSQ 120 NRVLPSRPAT RKGCNAMLRI TAKDGGKWVI YGFVKEHNHE LNPNKIPPRR SHRIAFCEDE 180 KDLKIRELST ELHREKKKSA AYQEKLQIVL KYIEEHTQRL SLKVELATNN MRELESEEQD 240 SSYSD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G195800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007226039.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	M5XZA2	0.0	M5XZA2_PRUPE; Uncharacterized protein
STRING	EMJ27238	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15811	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-47	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Prupe.1G195800.1.p
Entrez Gene	18792756