PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G195900.5.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 145aa MW: 16287.4 Da PI: 7.3426

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G195900.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.7	8e-18	42	123	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++vGF +r+ +s+ks+r+g+i++r + C + ++ ++ +r C+a++ +++ek g w+v+k+ ++HnH+l+ Prupe.1G195900.5.p 42 FYDDYASRVGFLTRVLSSRKSERDGSIISRGLGCRGVSDNGRKV-------MQECAQREFCTAMVLLRQEKPGSWVVKKFLKDHNHPLV 123 9*******************************8666655544.......4588999***************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.0E-15	42	123	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MDDQNGTMYT SEGGETTIVE VSTNQEPYEG MLFESEDAAR VFYDDYASRV GFLTRVLSSR 60 KSERDGSIIS RGLGCRGVSD NGRKVMQECA QREFCTAMVL LRQEKPGSWV VKKFLKDHNH 120 PLVVQSQKSR RTLVSLSYVA YVLM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G195900.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007227200.2	7e-97	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	A0A251R127	1e-103	A0A251R127_PRUPE; Uncharacterized protein
STRING	EMJ28399	2e-96	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	4e-35	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Prupe.1G195900.5.p