PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G196000.4.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 178aa MW: 20815.9 Da PI: 10.1433

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G196000.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.2	1e-26	12	100	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k r++ra+tr gCka+++vk +k++kw++tk+ ++HnH+l+ Prupe.1G196000.4.p 12 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGHCVSIRGKFGPVRKPRASTREGCKAMIHVKYDKSSKWVITKFIKDHNHPLV 100 9************************************99999998**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-24	12	100	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MEFESEDAAK IFYDEYARRV GFVMRVMSCR RSERDGRILA RRLGCNKEGH CVSIRGKFGP 60 VRKPRASTRE GCKAMIHVKY DKSSKWVITK FIKDHNHPLV VSPREARQTM DEKDKKIQEL 120 TAELRNKKRL CTTYQEQLTA FTKIVEEYSD QLSKKVQNVV SNLKEFESID RELSQHR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G196000.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008222477.1	1e-130	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_016648093.1	1e-130	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020409810.1	1e-130	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_020409811.1	1e-130	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_021833156.1	1e-130	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A251R2Y8	1e-129	A0A251R2Y8_PRUPE; Uncharacterized protein
STRING	XP_008222477.1	1e-130	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-107	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Prupe.1G196000.4.p