PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G217700.2.p

Common Name

PRUPE_ppa025527mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 160aa MW: 17710.2 Da PI: 10.0121

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G217700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.5	3.1e-10	53	100	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L++l+P + ++ + Ka L + ++Y++ Lq Prupe.1G217700.2.p 53 SHSLAERARREKINVRMKLLQSLVPGC----DQINGKAHALDEIIKYVQLLQ 100 8***********************9....9***************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.33E-6	47	104	No hit	No description
SuperFamily	SSF47459	1.57E-15	47	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.151	49	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-15	50	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.4E-8	53	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-5	55	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MVSEEEGERK GKKQRKQNGS EAKKQSKVAA AFAERVQRNG VRVKARRGEA TDSHSLAERA 60 RREKINVRMK LLQSLVPGCD QINGKAHALD EIIKYVQLLQ NQVECLAAEL AFVDAMLYDD 120 CELNPSTNPC ASDQATRKKK ENRGKATALN LASVLCPFR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G217700.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008222403.1	1e-85	PREDICTED: transcription factor bHLH137-like
Swissprot	Q93W88	2e-32	BH137_ARATH; Transcription factor bHLH137
TrEMBL	M5XQV8	1e-112	M5XQV8_PRUPE; Uncharacterized protein
STRING	EMJ28304	1e-113	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	4e-33	bHLH family protein

Link Out ? help Back to Top
Phytozome	Prupe.1G217700.2.p
Entrez Gene	18790549

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]