PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G224900.6.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 343aa    MW: 37848.4 Da    PI: 9.8974
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G224900.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1314.2e-41185261278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         CqvegC+ dls+ak+yhr+h++C  hsk+p+v+v+g+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+
  Prupe.1G224900.6.p 185 CQVEGCNIDLSSAKDYHRKHRICANHSKSPKVIVEGVERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPQT 261
                         **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-33178246IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.496182259IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.11E-39183264IPR004333Transcription factor, SBP-box
PfamPF031102.4E-32185258IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MNSVLLMEWN EKPPSLWDLE NLFMFGAKVT DNPKKLQPAD WGIEGERGMN SESFYSTGGD  60
GGSGVSGSDL GDGSSKSSKS ASVSSSVGES KKPNFNLDAF EGFPNDFIHK NESAKAEALG  120
SSPTHEVSAG SGEPLLSLKL GKRMYFEDVC AGNNPKSSSL SVISSSMAKT KRSKSTGQSA  180
FAPHCQVEGC NIDLSSAKDY HRKHRICANH SKSPKVIVEG VERRFCQQCS RFHGLSEFDE  240
KKRSCRRRLS DHNARRRKPQ TEALRNPTRL SSSLFSTDEP CFGPSPKCLH KASLKFNMGW  300
HLQLQVRTNE RIFSKACKRR GHWRAAEFGQ QWNSKFNNNA VS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-261852581184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240257KKRSCRRRLSDHNARRRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G224900.6.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007222798.10.0squamosa promoter-binding-like protein 2
RefseqXP_020418927.10.0squamosa promoter-binding-like protein 2
RefseqXP_020418931.10.0squamosa promoter-binding-like protein 2
SwissprotQ9S8402e-76SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLA0A251R1N90.0A0A251R1N9_PRUPE; Uncharacterized protein
STRINGEMJ239970.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-68squamosa promoter binding protein-like 2