PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G260700.1.p
Common NamePRUPE_ppa016136mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 266aa    MW: 29570.4 Da    PI: 7.2827
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G260700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002985107123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C k F ++  L  H++ H
  Prupe.1G260700.1.p  85 FECQYCFKEFANSQALGGHQNAH 107
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-580111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.24E-681112No hitNo description
PROSITE profilePS5015711.40685112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEKGHDQDLD QNHAHSAGSC VEKKLRLFGF ELSPSKNEDS SIKGFAEGDE SVNSSNSISY  60
GREVHMNKPA SNEKSSTSEA DEKKFECQYC FKEFANSQAL GGHQNAHKKE RMKKKRLQLQ  120
ARKASINYYL QPFQTNNLGN GLAFHHGSSP SSWFYDPSSY VINPDQFTLH EESQISFNPF  180
DQNGSSGSQV SNWYALPPQF SSQTDEQDAS NNKFTLTQTD RSGESRPVVF KPSPLSASTQ  240
SCKPLDLQLG LGLPSKIRRS SRSEV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G260700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226910.10.0zinc finger protein 5
TrEMBLM5XQD40.0M5XQD4_PRUPE; Uncharacterized protein
STRINGEMJ281090.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.18e-18C2H2 family protein