PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G272500.1.p

Common Name

PRUPE_ppa017864mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 426aa MW: 44985.8 Da PI: 7.917

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G272500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.6	2.6e-39	59	155	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Prupe.1G272500.1.p 59 PPKRTSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSAPshy 149 789******************************************************************9997666666666644444444 PP TCP 89 .....k 89 + Prupe.1G272500.1.p 150 lrpnsS 155 444330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.0E-37	63	182	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.636	65	119	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MIMEAENGIR CRPNFPLQFL DKNQDDDIQE APGDPGSNPN RPGSSLTQEQ QPNNGKKPPP 60 KRTSTKDRHT KVDGRGRRIR MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAVIAAT 120 GTGTIPANFT SLNISLRSSG SSMSAPSHYL RPNSSNYFMN FNPNNLGAAA ASQLIMDENS 180 QRGRILFPGV GLLSSESSPS SSMLLNFNNA MLEAKRELRD QGGSLGEVSE GGEASAMGRK 240 RIRPEQDLLS SSSSSSSSSQ SSHHQMGISN SYMLQSASTG SIPASQSTIP ATFWMVANNP 300 SSGSGGGGHH VHEPPINPMW TIPGINNGIN SNMYRGASVS SGGGHGLHFM NFAPPPMAAI 360 LPSHMGSTPH GGGGSIADSH LGVMAALNAY RPILGGVMAE PPGGNNRQHS HHGADEGHDR 420 DSNAR*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MIMEAENGIR CRPNFPLQFL DKNQDDDIQE APGDPGSNPN RPGSSLTQEQ QPNNGKKPPP  60
KRTSTKDRHT KVDGRGRRIR MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAVIAAT  120
GTGTIPANFT SLNISLRSSG SSMSAPSHYL RPNSSNYFMN FNPNNLGAAA ASQLIMDENS  180
QRGRILFPGV GLLSSESSPS SSMLLNFNNA MLEAKRELRD QGGSLGEVSE GGEASAMGRK  240
RIRPEQDLLS SSSSSSSSSQ SSHHQMGISN SYMLQSASTG SIPASQSTIP ATFWMVANNP  300
SSGSGGGGHH VHEPPINPMW TIPGINNGIN SNMYRGASVS SGGGHGLHFM NFAPPPMAAI  360
LPSHMGSTPH GGGGSIADSH LGVMAALNAY RPILGGVMAE PPGGNNRQHS HHGADEGHDR  420
DSNAR*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular tissues of the embryo (PubMed:17953649). Expressed in young proliferating tissues (PubMed:21668538). {ECO:0000269\|PubMed:17953649, ECO:0000269\|PubMed:21668538}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269\|PubMed:17953649, ECO:0000269\|PubMed:21668538, ECO:0000269\|PubMed:22155632, ECO:0000269\|PubMed:22267487, ECO:0000269\|PubMed:24689742, ECO:0000269\|PubMed:25655823, ECO:0000269\|PubMed:25757472, ECO:0000269\|PubMed:28132837}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G272500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269\|PubMed:17953649}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020410564.1	0.0	transcription factor TCP15 isoform X1
Refseq	XP_020410565.1	0.0	transcription factor TCP15 isoform X2
Swissprot	Q93Z00	2e-53	TCP14_ARATH; Transcription factor TCP14
TrEMBL	A0A251R425	0.0	A0A251R425_PRUPE; Uncharacterized protein
STRING	XP_008221641.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2120	32	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	4e-44	TCP family protein

Link Out ? help Back to Top
Phytozome	Prupe.1G272500.1.p
Entrez Gene	18789993

Publications ? help Back to Top
Steiner E, et al. The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin. Plant Physiol., 2016. 171(2): p. 1485-94 [PMID:27208284] Yang L, et al. Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence. Cell Host Microbe, 2017. 21(2): p. 156-168 [PMID:28132837] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]