PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G290100.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family YABBY
Protein Properties Length: 171aa    MW: 18255.4 Da    PI: 8.4945
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G290100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY109.46.6e-342414824163
               YABBY  24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvpp 114
                         v +P++ l+ +vtv+CGhC++l  ++ + a q +  ++h            l  +   +++     + +s+s ss   + +++ ++p++p 
  Prupe.1G290100.2.p  24 VGLPFKRLLDTVTVKCGHCSNLSFLSTRPALQGQCLSDH---------PTSLTLQAGCCSEFR---KGQSSSSSS---PISSEPSSPKAPF 99 
                         789******************987777777766666666.........222222222222222...222222222...234566789999* PP

               YABBY 115 virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                         v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa +
  Prupe.1G290100.2.p 100 VVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 148
                         ***********************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.6E-4124148IPR006780YABBY protein
SuperFamilySSF470956.68E-992146IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.2E-5102147IPR009071High mobility group box domain
CDDcd013902.74E-6109145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MQLSAAASRS STYDDDDFVS GGCVGLPFKR LLDTVTVKCG HCSNLSFLST RPALQGQCLS  60
DHPTSLTLQA GCCSEFRKGQ SSSSSSPISS EPSSPKAPFV VKPPEKKHRL PSAYNRFMKE  120
EIQRIKAANP EIPHREAFSA AAKNWARYIP SPSAGSDSGS CSSTNNILQE *
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected during flower and leaf development. Expression in the flower meristem in the early stage of flower development. When carpel primordia begin to form, specific and uniform expression in carpel primordia. Expression in the central region of the leaf plastochron 1 (P1) primordia. Detected up to P4 stage, hardly detected in the P5 leaves. {ECO:0000269|PubMed:14729915}.
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G290100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272501e-117AB627250.1 Malus x domestica mRNA, microsatellite: MEST098, clone: FLW01_10_E08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016652159.11e-109PREDICTED: protein CRABS CLAW isoform X3
SwissprotQ76EJ02e-50YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A251R7I91e-121A0A251R7I9_PRUPE; Uncharacterized protein
STRINGXP_008243820.11e-103(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.13e-49YABBY family protein