PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G304900.1.p
Common NamePRUPE_ppa019406mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 359aa    MW: 40171.1 Da    PI: 6.6771
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G304900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.3e-14165211354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Prupe.1G304900.1.p 165 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 211
                         79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-12165211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14166218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14166220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.77E-5175214No hitNo description
Gene3DG3DSA:3.30.70.2609.1E-4248297No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MMCGKKEDQG ECSQSVQNLQ AFQEHLFLQQ QHQMQQQQQH QMQQQHHQQQ GMIFPHDHQA  60
PPPILQPWTL PPIHSFNPSA HDQFLPTPPP PIPSSSSYAS FFNRRAPLQF TYDGSASEHH  120
HHLRILSETL GPMVQPGSAP FGLQAELGKL TAQEIMDAKA LAASKSHSEA ERRRRERINN  180
HLAKLRSLLP STTKTDKASL LAEVIQHVKE LKRQTSLIAE TSPVPTEMDE LIVDDASDED  240
GKFVIKASLC CEDRSDLLPD LIKTLKALRL RTLKAEITTL GGRVKNVLFI TGEEDSSSSG  300
GEQEQQHQVP HEHQQQQYCI SSIEEALKAV MEKTGGEHEQ SSSGSVKRQR TNNINILN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G304900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894070.0KP689407.1 Prunus pseudocerasus isolate Unigene10252 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224260.20.0transcription factor bHLH30
SwissprotQ9S7Y11e-113BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A251R5H60.0A0A251R5H6_PRUPE; Uncharacterized protein
STRINGEMJ254590.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-93bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]