PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G305900.1.p
Common NamePRUPE_ppa006243mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family RAV
Protein Properties Length: 422aa    MW: 45813.1 Da    PI: 9.2028
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G305900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.29.7e-1480128155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+ykGV   + +grW A+I++      ++r++lg+f  ++eAaka++ a+++++g
  Prupe.1G305900.1.p  80 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDVAAQRFRG 128
                         89****9888.8*********3.....5**********99*************98 PP
2B396.51.7e-30219332196
                         EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                         f+k+ tpsdv+k++rlv+pk++ae+h                  gg+  +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++
  Prupe.1G305900.1.p 219 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsgnnfnnhtststsGGSACKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKN 309
                         89****************************999999888888886677799**************************************** PP

                         --TT-EEEEEE-SSSEE..EEEE CS
                  B3  74 LkegDfvvFkldgrsefelvvkv 96 
                         Lk+gD+v F+++  ++++l++ +
  Prupe.1G305900.1.p 310 LKAGDIVSFQRSTGQDKQLYIDW 332
                         **********8766777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.27E-2680138No hitNo description
PfamPF008474.2E-980128IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-1780137IPR016177DNA-binding domain
PROSITE profilePS5103220.23181136IPR001471AP2/ERF domain
SMARTSM003801.2E-2881142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2081136IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.7E-40210335IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.19E-29217335IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-27218321No hitNo description
PROSITE profilePS5086312.802219336IPR003340B3 DNA binding domain
PfamPF023624.0E-28219332IPR003340B3 DNA binding domain
SMARTSM010192.9E-25219336IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDGMSLSSTE ESTTSDSISI SPNNHLLPTT IAVSPIAKSS PHADSLCRLG SGASSVILDS  60
EISSGGGGGI EAESRKLPSS KYKGVVPQPN GRWGAQIYEK HQRVWLGTFN EEDEAAKAYD  120
VAAQRFRGRD AVTNFKPSPT GTGTDDDDES DDVEAAFLNT HSKSEIVDML RKHTYNDELE  180
QSKRNNYGFL DANGKRARAH GPLGPFGSDR VPKAREQLFE KAVTPSDVGK LNRLVIPKQH  240
AEKHFPLQSG NNFNNHTSTS TSGGSACKGV LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG  300
WSRFVKEKNL KAGDIVSFQR STGQDKQLYI DWKPRMNVNN NNNSGVGSNP VPVQQVQMVR  360
LFGVNIFKIP GSGGGAVVDA ATAAIGGGSC NNNINNVGKR MREMELLELE FSKKPRIIGA  420
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5721633511117DNA-binding protein RAV1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00024PBMTransfer from AT1G25560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G305900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007227469.10.0AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9C6M51e-142RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLM5Y2Y00.0M5Y2Y0_PRUPE; Uncharacterized protein
STRINGEMJ286680.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-127RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]