PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G306200.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 303aa    MW: 33876.4 Da    PI: 6.9702
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G306200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.5e-06141160120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C+k+F+r  n++ H+
  Prupe.1G306200.1.p 141 FSCPVCSKTFNRYNNMQMHM 160
                         89*****************9 PP
2zf-C2H213.90.00016226248123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +Cgk+F  + + ++H +++
  Prupe.1G306200.1.p 226 FGCRKCGKPFAVRGDWRTHEKNC 248
                         56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-5137163No hitNo description
PROSITE profilePS5015710.242141168IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-6141160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.054141163IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
SMARTSM00355220189221IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.21E-5209246No hitNo description
Gene3DG3DSA:3.30.160.609.0E-5212246IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355140226246IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MQTPSTTTST TDLGTSATSF LEADEDQDEE SIFLSLGPPG QGVPKQYHLI YHQSSSSTQP  60
LPHNHHHHHH HHHHHHQDQN PNTDHLEDGA VTVALHIGPP SSGSTISSSI GNPNHNHIGA  120
PIEGQYWIPS PAQILVGPTQ FSCPVCSKTF NRYNNMQMHM WGHGSQYRKG PESLRGTKPA  180
SSVLRLPCYC CAEGCKNNIE HPRSRPLKDF RTLQTHYKRK HGSKPFGCRK CGKPFAVRGD  240
WRTHEKNCGK LWFCICGSDF KHKRSLKDHV RAFGDGHAPY GVELCTEPEE EDHLDDEDDD  300
DD*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G306200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020412512.10.0zinc finger protein WIP6
SwissprotQ9FX681e-119ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A251R5M60.0A0A251R5M6_PRUPE; Uncharacterized protein
STRINGXP_008243178.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-111C2H2-like zinc finger protein