PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G311000.1.p

Common Name

PRUPE_ppa011233mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 219aa MW: 23361.6 Da PI: 8.77

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G311000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	86.7	3.3e-27	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C ++p + p++q++++ +++k++G++ +l+l++a +++ r+++++sl+yeA+ r+ +P G+vg+++++++ Prupe.1G311000.1.p 4 SCNGCRVLRKGCSEKCSIRPSIewiksPDSQANATLFLAKFYGRAGLLNLINAGSQHLRPAIFKSLLYEACGRIVNPTFGSVGLMSSGSWA 94 6**************************************************************************************** PP DUF260 87 leqlkaelallkee 100 +q++++++l++++ Prupe.1G311000.1.p 95 QCQAAVDAVLAGSP 108 ****99988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.161	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.0E-21	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSEKCS IRPSIEWIKS PDSQANATLF LAKFYGRAGL LNLINAGSQH 60 LRPAIFKSLL YEACGRIVNP TFGSVGLMSS GSWAQCQAAV DAVLAGSPIA GLDADALNLI 120 PSPPNKSGDI RHVFRDSNSG ASRNKVTTRN RFKRSMNRTK THPGSLTEFA TGSHMAQFCN 180 FPDPEDLCPS PEGNGAGGDY DGEVGLELTL GLVPMRLN*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G311000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007223396.1	1e-162	LOB domain-containing protein 40
Swissprot	Q9M886	5e-68	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	M5XZ87	1e-160	M5XZ87_PRUPE; Uncharacterized protein
STRING	EMJ24595	1e-161	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-69	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Prupe.1G311000.1.p
Entrez Gene	18788644