PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G325000.2.p
Common NamePRUPE_ppa011006mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 214aa    MW: 24004.2 Da    PI: 9.3231
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G325000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1955109256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tkeq + Lee F+++++++ +++e LA++l+L  rqV vWFqNrRa+ k
  Prupe.1G325000.2.p  55 RKKLRLTKEQSRLLEESFRQHHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSK 109
                         78889************************************************98 PP
2HD-ZIP_I/II119.71.5e-3855143189
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                         +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+
  Prupe.1G325000.2.p  55 RKKLRLTKEQSRLLEESFRQHHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 143
                         69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.19E-2038112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-1940105IPR009057Homeodomain-like
PROSITE profilePS5007117.08651111IPR001356Homeobox domain
SMARTSM003891.6E-1753115IPR001356Homeobox domain
CDDcd000861.57E-1654112No hitNo description
PfamPF000467.1E-1755109IPR001356Homeobox domain
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
SMARTSM003407.8E-22111154IPR003106Leucine zipper, homeobox-associated
PfamPF021836.6E-10111145IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAVFPPTGSS SLELTISVPG FSSYPSLPNS SDQEEWMTAG MEDEEDSSNG SGPPRKKLRL  60
TKEQSRLLEE SFRQHHTLNP KQKEALAMQL KLRPRQVEVW FQNRRARSKL KQTEMECEYL  120
KRWFGSLTEQ NRRLQREVEE LRAMKVGPPT VLSPHSCEPL PASTLTMCPR CERVTTTTTT  180
TLDRDRDRGG PTKTNISSAP ATTLSSKVAT PAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111RRARSKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G325000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007223918.11e-146homeobox-leucine zipper protein HOX3
SwissprotQ0JKX13e-77HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH383e-77HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A251R6N81e-154A0A251R6N8_PRUPE; Uncharacterized protein
STRINGEMJ251171e-145(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.18e-77homeobox-leucine zipper protein 17