PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G334200.1.p
Common NamePRUPE_ppa002493mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARR-B
Protein Properties Length: 668aa    MW: 71902 Da    PI: 6.4074
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G334200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.42.7e-27232285155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gL++e+v+SHLQk+Rl
  Prupe.1G334200.1.p 232 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLSRENVASHLQKFRL 285
                         79*******************.********************************8 PP
2Response_reg75.42.1e-25481561109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+ + +++l+++l +  y +v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll++   e  +lp+i+++a g  + + + 
  Prupe.1G334200.1.p  48 VLVVDDDTTCLRILEVLLGRCAY-QVTACSQATVALNLLRERKgcFDVVLSDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADGRTSAVMQG 136
                         89*********************.*******************************************6644.8****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +k Ga d+l Kp++++el +
  Prupe.1G334200.1.p 137 IKHGACDYLIKPIHEAELKN 156
                         *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.98E-3445166IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.0E-4145179No hitNo description
SMARTSM004484.8E-2946158IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.96347162IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-2248156IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.88E-2649161No hitNo description
SuperFamilySSF466897.35E-19229289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28229289IPR009057Homeodomain-like
PROSITE profilePS512949.969229288IPR017930Myb domain
TIGRFAMsTIGR015571.9E-23232285IPR006447Myb domain, plants
PfamPF002494.4E-7234283IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MAALQRVAQS SVSTTASSYG SCKGGATSSF SAANEMAVSD RFPAGLRVLV VDDDTTCLRI  60
LEVLLGRCAY QVTACSQATV ALNLLRERKG CFDVVLSDVH MPDMDGFKLL EHVGLEMDLP  120
VIMMSADGRT SAVMQGIKHG ACDYLIKPIH EAELKNIWQH VVRKKWNGNK ELDHSGSLED  180
NDRNKRGNSD VEYTSSVNEG TEVILKGPKK RSNAKEDDDG DMESDDPSTS KKPRVVWSVE  240
LHQQFVSAVN QLGLDKAVPK RILELMNVPG LSRENVASHL QKFRLYLKRL AQQQSGISNG  300
FCGPVESNGK LGSLGRFDIQ ALAASGQIPP QTLAVLQAEL LGQPAGNLVP AMDQPAILHA  360
SLQGPKRAPV EHGVPFVQPL IKCQSNVSKH FPQSIIPAED VSSGFGSWRS NSLSTVAPSN  420
NLGGLATHNG SMLMDIMQQE QRQHKKTQQQ SVLTESSRLI NVQPSCLVVP AQSSTSFQAG  480
NSPASVNQSC SFNRSTVIDY SILSAQSNNS SLNIGHIPTG NLKTPSILDG YSAPGSVPST  540
SCSVNAGNNT SHQNSAVPFC DSRQLPGVLH DMSNIQGLYV DKSGEMLDQG PLRNLGFVGK  600
ETGIPSQFAV DDFESQVSNL NRGKIYVENN GNPVKEEPSM NLVDNAKVGI PILQEFSCSD  660
FMSVFTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-22228291164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G334200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007225140.10.0two-component response regulator ORR21
SwissprotA2XE311e-161ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-161ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLM5XK720.0M5XK72_PRUPE; Uncharacterized protein
STRINGEMJ263390.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-116response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]