PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G371100.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family DBB
Protein Properties Length: 219aa    MW: 23541.6 Da    PI: 7.213
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G371100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.62.2e-07443538
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                         C+ +++  ++ fC+ ++  lC++C    H+       H+
  Prupe.1G371100.2.p  4 QCDVCNKDDASVFCTADEAALCDTCDHRVHHAnklaskHQ 43
                        7******99*******************964446676676 PP
2zf-B_box24.55.6e-085692438
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                        ++C+ ++e ++ lfC++++  lC++C l  H    Ht
  Prupe.1G371100.2.p 56 PVCDICQERRAFLFCQQDRAILCRECDLPVHAAneHT 92
                        79**************************999556665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.879147IPR000315B-box-type zinc finger
CDDcd000214.44E-5347No hitNo description
SMARTSM003367.8E-7447IPR000315B-box-type zinc finger
PfamPF006432.7E-5444IPR000315B-box-type zinc finger
PROSITE profilePS5011910.12553100IPR000315B-box-type zinc finger
SMARTSM003363.8E-1453100IPR000315B-box-type zinc finger
CDDcd000211.08E-1056100No hitNo description
PfamPF006438.9E-75692IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MKIQCDVCNK DDASVFCTAD EAALCDTCDH RVHHANKLAS KHQRFSLIHP SSKQFPVCDI  60
CQERRAFLFC QQDRAILCRE CDLPVHAANE HTQKHSRFLL TGVKISATST LYTSSSPPTP  120
TISLKSADAT VTDPKPQPLI KKSVSTSAPA ISNPPSMSKN STLTTNTANS NKGGGIFVAH  180
DGVGCGSTSS ISEYLIETLP GWHVEDFLDF SSGPLGFC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G371100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020409744.11e-161B-box zinc finger protein 20
SwissprotQ9LQZ72e-71BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A251R9051e-160A0A251R905_PRUPE; Uncharacterized protein
TrEMBLA0A251R9321e-159A0A251R932_PRUPE; Uncharacterized protein
STRINGXP_008221324.11e-155(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-67salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]