PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G371300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 204aa    MW: 23633 Da    PI: 10.4379
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G371300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.77.3e-29959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien +nrqvt+skRrng++KKA+EL vLCda v++i++s++gk++ey+s
  Prupe.1G371300.1.p  9 KRIENATNRQVTYSKRRNGLFKKAHELTVLCDATVSLIMVSNSGKIHEYIS 59
                        79***********************************************86 PP
2K-box769.9e-2672168296
               K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhl.lGedLesLslkeLqqLeqqLekslkkiRskKn.ellleqieelqkkekelqee 90 
                         qk++g++ +++++e +q++l+kLk+ ++ L++++R++ lGe+L+++s+ eL+ +eq++e +++ iR++K  +++ +qi++++kk +++ e 
  Prupe.1G371300.1.p  72 QKTKGVDIWSSHYEAMQEHLKKLKEVNRRLRKQIRQRvLGECLNDMSFDELRGVEQEMEGAVEVIRKRKViRMISNQIDTTKKKLRSATEM 162
                         6788999***************************98538******************************648999**************** PP

               K-box  91 nkaLrk 96 
                         n++Lr+
  Prupe.1G371300.1.p 163 NRNLRE 168
                         ****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.651161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-39160IPR002100Transcription factor, MADS-box
CDDcd002651.28E-36280No hitNo description
SuperFamilySSF554551.83E-35396IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014868.0E-1782168IPR002487Transcription factor, K-box
PROSITE profilePS5129713.65884183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MARGKIQIKR IENATNRQVT YSKRRNGLFK KAHELTVLCD ATVSLIMVSN SGKIHEYISP  60
STTTKQFFDQ FQKTKGVDIW SSHYEAMQEH LKKLKEVNRR LRKQIRQRVL GECLNDMSFD  120
ELRGVEQEME GAVEVIRKRK VIRMISNQID TTKKKLRSAT EMNRNLREFD ARDDPHYGLV  180
KNGREDYESA FGYSSNGGPR IFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-15159159MEF2 CHIMERA
6byy_B7e-15159159MEF2 CHIMERA
6byy_C7e-15159159MEF2 CHIMERA
6byy_D7e-15159159MEF2 CHIMERA
6bz1_A8e-15159159MEF2 CHIMERA
6bz1_B8e-15159159MEF2 CHIMERA
6bz1_C8e-15159159MEF2 CHIMERA
6bz1_D8e-15159159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G371300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2433680.0KM243368.1 Prunus pseudocerasus APETALA3-like protein transcript variant 1 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020415740.11e-149floral homeotic protein DEFICIENS isoform X1
RefseqXP_020415744.11e-149floral homeotic protein DEFICIENS isoform X1
SwissprotP237062e-92DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLA0A251R9301e-150A0A251R930_PRUPE; Uncharacterized protein
STRINGXP_008221326.11e-138(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.16e-80MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]