PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G371300.4.p
Common NamePRUPE_ppa026083mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 175aa    MW: 20156.9 Da    PI: 10.1393
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G371300.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.15.5e-29959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien +nrqvt+skRrng++KKA+EL vLCda v++i++s++gk++ey+s
  Prupe.1G371300.4.p  9 KRIENATNRQVTYSKRRNGLFKKAHELTVLCDATVSLIMVSNSGKIHEYIS 59
                        79***********************************************86 PP
2K-box614.7e-2172141270
               K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhl.lGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                         qk++g++ +++++e +q++l+kLk+ ++ L++++R++ lGe+L+++s+ eL+ +eq++e +++ iR++K+
  Prupe.1G371300.4.p  72 QKTKGVDIWSSHYEAMQEHLKKLKEVNRRLRKQIRQRvLGECLNDMSFDELRGVEQEMEGAVEVIRKRKD 141
                         6788999***************************98538******************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.651161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-39160IPR002100Transcription factor, MADS-box
CDDcd002651.70E-37280No hitNo description
SuperFamilySSF554551.2E-35396IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-28323IPR002100Transcription factor, MADS-box
PfamPF003198.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-1282141IPR002487Transcription factor, K-box
PROSITE profilePS5129710.31584174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MARGKIQIKR IENATNRQVT YSKRRNGLFK KAHELTVLCD ATVSLIMVSN SGKIHEYISP  60
STTTKQFFDQ FQKTKGVDIW SSHYEAMQEH LKKLKEVNRR LRKQIRQRVL GECLNDMSFD  120
ELRGVEQEME GAVEVIRKRK DARDDPHYGL VKNGREDYES AFGYSSNGGP RIFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-15159159MEF2 CHIMERA
6byy_B4e-15159159MEF2 CHIMERA
6byy_C4e-15159159MEF2 CHIMERA
6byy_D4e-15159159MEF2 CHIMERA
6bz1_A5e-15159159MEF2 CHIMERA
6bz1_B5e-15159159MEF2 CHIMERA
6bz1_C5e-15159159MEF2 CHIMERA
6bz1_D5e-15159159MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G371300.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2433680.0KM243368.1 Prunus pseudocerasus APETALA3-like protein transcript variant 1 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007227134.11e-125floral homeotic protein DEFICIENS isoform X2
SwissprotE0CPH42e-78AP3_VITVI; Agamous-like MADS-box protein AP3
TrEMBLA0A251R9011e-128A0A251R901_PRUPE; Uncharacterized protein
STRINGEMJ283331e-125(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.17e-69MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]