PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G373600.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 606aa    MW: 67591.3 Da    PI: 5.9627
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G373600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.5e-094244562254
                         SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +yp+ +e+  LA+++gLt +qV +WF N R +
  Prupe.1G373600.1.p 424 LPYPKDSEKVMLARQTGLTRNQVANWFINARVR 456
                         69*****************************88 PP
2BELL119.71.3e-38282353172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         erq+lq+kk+kLls+l+eVd+rYkqy++q+q+v+s F+ vag g+a pYt+lAl+aiSrhFr+L+dai++qi
  Prupe.1G373600.1.p 282 ERQDLQNKKTKLLSMLDEVDRRYKQYYQQMQVVVSYFDKVAGNGAAGPYTALALQAISRHFRSLRDAIKGQI 353
                         799*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.0E-58203351IPR006563POX domain
PfamPF075262.7E-49209349IPR006563POX domain
PROSITE profilePS5007111.726397460IPR001356Homeobox domain
SMARTSM003892.6E-9400464IPR001356Homeobox domain
CDDcd000861.29E-11400461No hitNo description
SuperFamilySSF466891.97E-16401468IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-26403466IPR009057Homeodomain-like
PfamPF059209.9E-16417456IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MATYFQNLSN QNLLNPSYAG DEKLASYPEP PANMMMYLNQ ASYAAGSYSE VLSGGSFSPH  60
KYADSDGGRN EMMFIPPTSD QARDCVTGDS LIGKHNIQDH GLSLSLASTQ IPPAVSLPSF  120
QYQYPNPSLS SVLCTSPMLG KGEIYCKGDE YNQSEEFKNF ESLTSGFYGG GGHETVKTQS  180
LYNPMCSVGS KEMHSETYLY DSLGSASTML SSKYLKAAQQ LLDEVVNVRK ALKQSRLNKH  240
QNSKRIGLDG SKETDGNDQH LPRSSDPSES STISTLELSP AERQDLQNKK TKLLSMLDEV  300
DRRYKQYYQQ MQVVVSYFDK VAGNGAAGPY TALALQAISR HFRSLRDAIK GQIQVTRKRL  360
GEQDSSSDGQ GGVIPRLRYV DQQLRQQRAF QQLGGMQHAW RPQRGLPESS VAILRAWLFE  420
HFLLPYPKDS EKVMLARQTG LTRNQVANWF INARVRLWKP MIEEMYKEEF GDLDMDSKSS  480
PENVLKEEAR AEFSASEDRK EELQESMKSA TADSNEPGQV QKSGHSLNHN AVATYDMSGL  540
DQFAVGSNEV SLALNLRHCE EHDGFPSSTV SHVRVHDDAA ASLDCHYEDP EQQQLIQVWR  600
YPPVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-14406464563Homeobox protein Meis2
3k2a_B2e-14406464563Homeobox protein Meis2
4xrm_A1e-14406464563Homeobox protein Meis2
4xrm_B1e-14406464563Homeobox protein Meis2
4xrs_A1e-14406463158Homeobox protein Meis1
4xrs_B1e-14406463158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G373600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226414.20.0BEL1-like homeodomain protein 3
RefseqXP_020410200.10.0BEL1-like homeodomain protein 3
RefseqXP_020410201.10.0BEL1-like homeodomain protein 3
SwissprotQ9FWS91e-120BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLA0A251RBU20.0A0A251RBU2_PRUPE; Uncharacterized protein
STRINGXP_008221346.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.23e-97BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]