PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G378800.1.p
Common NamePRUPE_ppa024375mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 100aa    MW: 11114.5 Da    PI: 8.8841
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G378800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07551246
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                        g+WT    + + +a + + ++   +W+  ar +g g++ +++k ++ +
  Prupe.1G378800.1.p  5 GSWTSRQNKMFENALAVYDKDtpdRWHNLARAVG-GKSVEEVKKHYEM 51
                        89********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.657257IPR017884SANT domain
SMARTSM007175.0E-7355IPR001005SANT/Myb domain
CDDcd001676.20E-6653No hitNo description
Gene3DG3DSA:1.10.10.601.3E-4659IPR009057Homeodomain-like
SuperFamilySSF466898.58E-13660IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MASSGSWTSR QNKMFENALA VYDKDTPDRW HNLARAVGGK SVEEVKKHYE MLVEDVNKIE  60
AGEVPLPNYR KPAAAAGNGK AYSNSMDIEE QRMKSLKLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-32299693RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G378800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007225405.18e-69protein RADIALIS-like 3
SwissprotQ1A1732e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLM5XL082e-67M5XL08_PRUPE; Uncharacterized protein
STRINGEMJ266043e-68(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.29e-38RAD-like 6