PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G398700.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family DBB
Protein Properties Length: 271aa    MW: 29116.1 Da    PI: 4.347
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G398700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.71.4e-09443437
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                        + C+ +++  ++lfC+ ++ +lC +C +++H        H
  Prupe.1G398700.2.p  4 KLCDSCKSATATLFCRADSAFLCVNCDSKIHAAnklasrH 43
                        68*****************************554455555 PP
2zf-B_box28.43.3e-094691342
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         + C+ +e+ +++  C+ ++  lC +C   +H+       H++vp+
  Prupe.1G398700.2.p 46 VWLCEVCEQAPAHVTCKADDAALCVTCDRDIHSAnplsrrHERVPV 91
                        679*****************************66899999*99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.893148IPR000315B-box-type zinc finger
SMARTSM003361.4E-15148IPR000315B-box-type zinc finger
PfamPF006437.3E-7443IPR000315B-box-type zinc finger
CDDcd000211.88E-9548No hitNo description
PROSITE profilePS5011910.8364491IPR000315B-box-type zinc finger
PfamPF006431.8E-74691IPR000315B-box-type zinc finger
CDDcd000212.97E-94791No hitNo description
SMARTSM003364.0E-114991IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DSAFLCVNCD SKIHAANKLA SRHARVWLCE VCEQAPAHVT  60
CKADDAALCV TCDRDIHSAN PLSRRHERVP VTPFYDSGNS AANSAPVVKS VVNFLDDRYF  120
SDVDGQDAET EVSREEAEAA SWLLPNPKAM ENPDLNSGEY FLPEMDPYLD LDYGHVDPKL  180
EDAQEQNSCG TDGVVPVQSK SVQPQLVNDH SFEIDFSAAS KPYVYGFHAQ CLSQSVSSSS  240
MDVSVVPDGN TTMTDRGGGV NTSGGSDFIG *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.17330.0fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G398700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9393030.0EU939303.1 Prunus persica CONSTANS-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007222404.10.0zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-102COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A251RB670.0A0A251RB67_PRUPE; Uncharacterized protein
STRINGEMJ236030.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.12e-95CONSTANS-like 4