PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G407500.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 188aa    MW: 21331.7 Da    PI: 5.4066
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G407500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52e-31127184158
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                         ldDg++WrKYG+K+vk+s++pr+YY+C+ +gCpvkk+ver+++dp +v++tYeg Hnh
  Prupe.1G407500.1.p 127 LDDGFKWRKYGKKMVKNSPNPRNYYKCSVEGCPVKKRVERDRDDPGFVITTYEGVHNH 184
                         59******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-33113184IPR003657WRKY domain
SuperFamilySSF1182907.45E-28120184IPR003657WRKY domain
PROSITE profilePS5081129.769122184IPR003657WRKY domain
SMARTSM007745.3E-37127186IPR003657WRKY domain
PfamPF031067.6E-25128184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MISTCSLVTK LCVKKAFTTF LVAKLMSNSN NFRAQESPEN DFSEQSNFEF SEYLMIGEWL  60
DEDHPTSMAL ETVQNSGYQA NEVDESRGSS SQLGGSNSRE NESGSVQERQ EVRERVAFKT  120
KSEVEILDDG FKWRKYGKKM VKNSPNPRNY YKCSVEGCPV KKRVERDRDD PGFVITTYEG  180
VHNHLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-26117184774Probable WRKY transcription factor 4
2lex_A3e-26117184774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G407500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818234e-35LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132574e-35LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020409575.11e-139probable WRKY transcription factor 50
SwissprotQ8VWQ52e-49WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A251RAL21e-138A0A251RAL2_PRUPE; Uncharacterized protein
STRINGXP_008220527.11e-110(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.15e-51WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]