PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G410700.1.p

Common Name

PRUPE_ppa004359mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 526aa MW: 57692.1 Da PI: 8.2756

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G410700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.2e-05	91	111	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H Prupe.1G410700.1.p 91 CEICNKGFQREQNLQLHRRGH 111 *******************88 PP
2	zf-C2H2	12.4	0.00047	165	187	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Prupe.1G410700.1.p 165 WKCEKCSKRYAVQSDWKAHSKIC 187 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-5	88	111	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.32E-7	88	111	No hit	No description
PROSITE profile	PS50157	10.949	89	111	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.021	89	111	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	91	111	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.4E-4	153	186	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.32E-7	160	185	No hit	No description
SMART	SM00355	130	165	185	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MMKGLMGDEN MSNLTCASGD LSASNSSIRN ESSSAGTLYP QQQSSSANDI QQPQQPPPPK 60 KKRNLPGNPD PDAEVIALSP KSLMATNRFL CEICNKGFQR EQNLQLHRRG HNLPWKLKQR 120 TNKEVRKKVY LCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKRYAVQSDW 180 KAHSKICGTR EYRCDCGTLF SRRDSFITHR AFCDALAQEN STSTAARSAM PASINPLLSS 240 LPQLHTHGLQ GLSVKREQDQ QQQLLPPWLS CLPEGEATAP SGLPSMNMSS PLFSTSSFQQ 300 YYSFDHQNPN PSSSSTTTLP DFQQPHTASP HMSATALLQK ASEMGATISK PSHSPMFLKP 360 PSHQAHVSNG AFDDGFGNND NKSSLLHDMM MMSNSFGDQQ VSSAFGDHRQ AFNGIMVGGN 420 NNFVEVNNNN NNINPPKNYK SMELEQLGRS GTDNNNNDEA LTRDFLGLRA PFSSSAAAAA 480 AAASHGHVDF FNINMAGLDH HVNSSSSSAY TGQQSDHQNQ TSWQG*

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MMKGLMGDEN MSNLTCASGD LSASNSSIRN ESSSAGTLYP QQQSSSANDI QQPQQPPPPK  60
KKRNLPGNPD PDAEVIALSP KSLMATNRFL CEICNKGFQR EQNLQLHRRG HNLPWKLKQR  120
TNKEVRKKVY LCPEPTCVHH DPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKRYAVQSDW  180
KAHSKICGTR EYRCDCGTLF SRRDSFITHR AFCDALAQEN STSTAARSAM PASINPLLSS  240
LPQLHTHGLQ GLSVKREQDQ QQQLLPPWLS CLPEGEATAP SGLPSMNMSS PLFSTSSFQQ  300
YYSFDHQNPN PSSSSTTTLP DFQQPHTASP HMSATALLQK ASEMGATISK PSHSPMFLKP  360
PSHQAHVSNG AFDDGFGNND NKSSLLHDMM MMSNSFGDQQ VSSAFGDHRQ AFNGIMVGGN  420
NNFVEVNNNN NNINPPKNYK SMELEQLGRS GTDNNNNDEA LTRDFLGLRA PFSSSAAAAA  480
AAASHGHVDF FNINMAGLDH HVNSSSSSAY TGQQSDHQNQ TSWQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-33	161	221	3	63	Zinc finger protein JACKDAW
5b3h_F	2e-33	161	221	3	63	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	127	KLKQRTNKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G410700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007223151.2	0.0	protein indeterminate-domain 2
Refseq	XP_020410896.1	0.0	protein indeterminate-domain 2
Swissprot	Q8H1F5	1e-116	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A251RB29	0.0	A0A251RB29_PRUPE; Uncharacterized protein
STRING	EMJ24350	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-109	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Prupe.1G410700.1.p
Entrez Gene	18789240

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]