PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G412000.1.p
Common NamePRUPE_ppa018120mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 338aa    MW: 37075.6 Da    PI: 8.6437
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G412000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.63.5e-18209242134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         Cs C+t +TplWR+gp g+k+LCnaCG+++rk +
  Prupe.1G412000.1.p 209 CSDCHTNSTPLWRSGPLGPKSLCNACGIRQRKAR 242
                         *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.7E-17203254IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.334203239IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.18E-12205243No hitNo description
Gene3DG3DSA:3.30.50.109.0E-15207242IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.74E-11208238No hitNo description
PfamPF003208.2E-16209242IPR000679Zinc finger, GATA-type
PROSITE patternPS003440209234IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MMTPVYLNPA SSPFSMVEQA EDQRLKLFIS PPYDEAASCT SFPFPTFFDS LQDQTPGTTF  60
TSLAHHQSQL YHHKDKNIWD CGTSYDQASP SSSLVQAHVV DAISDKDRRL SRCGDHERET  120
NNIGGEGGGE EEGRSSNYIT RPKSVKWMSS KMRLMQKMTS NNPDLPPGTT DHIPAEISEH  180
KFQIHAQPRE ISETSFSSNG NNTATVRVCS DCHTNSTPLW RSGPLGPKSL CNACGIRQRK  240
ARRAMAEAAA AAANRFAVGS ADTSSPKGKV AKEKKSRGSH KNKISKLVIT DNASISHNNK  300
KKICFKALDF QRVFPQDVAE AAMLLMELSC GLINNHS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G412000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020415698.10.0GATA transcription factor 21
RefseqXP_020415700.10.0GATA transcription factor 21
TrEMBLA0A251RBV20.0A0A251RBV2_PRUPE; Uncharacterized protein
STRINGEMJ230870.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.13e-18cytokinin-responsive gata factor 1