PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G413400.1.p
Common NamePRUPE_ppa016461mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 243aa    MW: 26081.9 Da    PI: 10.7179
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G413400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding476e-15129173347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +W++eE+  +v + ++lG+g+Wk I+r++ ++Rt+ q+ s+ qky
  Prupe.1G413400.1.p 129 AWSEEEHRVFVMGLEKLGKGDWKGISRHFVTTRTPTQVASHAQKY 173
                         7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.664318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129415.374122178IPR017930Myb domain
TIGRFAMsTIGR015571.7E-17125176IPR006447Myb domain, plants
SuperFamilySSF466892.84E-17125178IPR009057Homeodomain-like
SMARTSM007171.2E-10126176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-10127172IPR009057Homeodomain-like
CDDcd001671.57E-9129174No hitNo description
PfamPF002498.8E-12129173IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRKCSQCGN MGHNSRTCGV RQPRQRGGGG GGGLRLFGVQ VLDLSSSSSS SNSLISRKKK  60
NIIIKRCPPS MVHCLPSVAA SSPTAPSSST SSRLQSRALI DLNSEKMSNG YPSDGLTALP  120
QENNNKGVAW SEEEHRVFVM GLEKLGKGDW KGISRHFVTT RTPTQVASHA QKYFLRINTL  180
NKKRRRPNLF YLSAVFSSTL AAEPAAPLPT AATDLELELA APIPLDQQTK PCPRALVIAP  240
IC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G413400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021800512.11e-111transcription factor MYBS3-like
TrEMBLM5XUN81e-178M5XUN8_PRUPE; Uncharacterized protein
STRINGEMJ253631e-179(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.14e-31MYB_related family protein