PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G416700.1.p
Common NamePRUPE_ppa006938mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 390aa    MW: 44386.1 Da    PI: 6.5965
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G416700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-093173512155
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Prupe.1G416700.1.p 317 KWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 351
                         669*****************************885 PP
2ELK35.91.6e-12271292122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK++Ll+KYsgyL+sLkqE+s
  Prupe.1G416700.1.p 271 ELKNHLLKKYSGYLSSLKQELS 292
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-21123167IPR005540KNOX1
PfamPF037902.0E-22124166IPR005540KNOX1
SMARTSM012562.7E-28174225IPR005541KNOX2
PfamPF037916.9E-24178223IPR005541KNOX2
SMARTSM011881.0E-6271292IPR005539ELK domain
PfamPF037897.7E-10271292IPR005539ELK domain
PROSITE profilePS5121311.243271291IPR005539ELK domain
PROSITE profilePS5007112.957291354IPR001356Homeobox domain
SuperFamilySSF466891.67E-19292366IPR009057Homeodomain-like
SMARTSM003892.8E-13293358IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-27296357IPR009057Homeodomain-like
CDDcd000867.78E-12303355No hitNo description
PfamPF059201.1E-16311350IPR008422Homeobox KN domain
PROSITE patternPS000270329352IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEEYNQMDHE SSGGRGNFLY ASPNLGGNYG RASHDHQMGI NAFHLQSSGG GDFHSPGGAH  60
PINVKTEAST SHHGHHKFQY NNNNNNNNNN PLLSSRGHQP VVQQQHNLDR QNDDHTLSSN  120
EVEAIKAKIV AHPQYSNLLE AYMDCQRVGA PSEVVARLTA ARQEFEARQR SSVASREASK  180
DPELDQFMEA YYDMLVKYRE ELTRPIQEAM DFMRRIETQL NMLGNNNAPP LRIFSPSEDK  240
CEGLGSSEEE QENSGGETEV PEIDPRAEDR ELKNHLLKKY SGYLSSLKQE LSKKKKKGKL  300
PKDARQKLLS WWELHYKWPY PSESEKVALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF  360
MVMDGLHPQN AALYMDGHYI GDGHYRLGP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed only in the stems.
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G416700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3580500.0DQ358050.1 Prunus persica knotted-like transcription factor (KNOPE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007223047.10.0homeobox protein knotted-1-like 2
SwissprotO041350.0KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLM5XFK50.0M5XFK5_PRUPE; Uncharacterized protein
STRINGEMJ242460.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-120KNOTTED-like from Arabidopsis thaliana