PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G419000.1.p
Common NamePRUPE_ppa019623mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRF
Protein Properties Length: 592aa    MW: 63720.6 Da    PI: 8.9002
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G419000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.81.1e-24210254145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+epgrCrRtDGKkWRC+r++++++k+CErH++rgr+rsrk++e+
  Prupe.1G419000.1.p 210 DPEPGRCRRTDGKKWRCWRDAVPDQKYCERHMNRGRHRSRKPVEP 254
                         79****************************************985 PP
2QLQ62.51.1e-21144180137
                 QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                         ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k
  Prupe.1G419000.1.p 144 GPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIKK 180
                         59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.4E-13144180IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.91145180IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.5E-16145178IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.023210254IPR014977WRC domain
PfamPF088792.8E-20211253IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MDFGVVGFDG LGGAAAGTGF ASLASSSSDQ ETKHKWYGSG FHKQGRSAGT VEEDWRSSKL  60
PKTDDFLSAS KTMPNNSTHF SDGQQLLSFS NSPNSEAVLV DKSTQNASLP YFHQPLSAYN  120
RSTGHNTGSF NGAAMHWDIA GVRGPFTPSQ WMELEHQALI YKYITANVPI PSNLLIPIKK  180
ALDSAFPNGL PRPNTLGWGS IHLGFSNNTD PEPGRCRRTD GKKWRCWRDA VPDQKYCERH  240
MNRGRHRSRK PVEPVAGTTA AATTTTTTSK QLMSSASSSA SSVSIPAGGG SSSLSIANQQ  300
LKSLQPAASN SSAATQMNRM FMNKENVGER MHQTPGPSML SKENPFFIQK QQMGYEESSR  360
TEFGLVPSDS LLNPSQKGSS LMSCRNYGSS SQNLTDPAET NSQQHSLRHF IDDWPKNQSN  420
RPAISWPDQF DMQSDRTQLS ISIPIASSDF IPSTSSTNNE KLTLSPLRLS RELNPKPMGL  480
GVGSALNAQN NKQANWIPIS WETSLGGPLG EVLHHTNNNT AAECKNSSVL NLMTEGWDKN  540
SPSSLGSSPT GVLQKTAFGS LSNSSAGSSP RAENNNLLGS SILDSSSLPA L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G419000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4733682e-45AM473368.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X262323.6, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007227185.10.0growth-regulating factor 6
TrEMBLM5XR270.0M5XR27_PRUPE; Uncharacterized protein
STRINGEMJ283840.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.14e-87growth-regulating factor 1