PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G424400.1.p
Common NamePRUPE_ppa014964mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 224aa    MW: 23967.3 Da    PI: 8.8241
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G424400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.91.9e-292102196
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C++ C+l+ ++     p++q +++ +++k+FG+s +l++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++
  Prupe.1G424400.1.p   2 SCNGCRVLRKGCSETCILRSCLqaidsPEAQGNATLFLAKFFGRSDLLSFISAVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWH 92 
                         6*********************9999999999*********************************************************** PP

              DUF260  87 leqlkaelal 96 
                         ++q+++e++l
  Prupe.1G424400.1.p  93 VCQSAVETVL 102
                         *****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.41107IPR004883Lateral organ boundaries, LOB
PfamPF031956.9E-252100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR SCLQAIDSPE AQGNATLFLA KFFGRSDLLS FISAVPEPQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCQSAVET VLSGGVLRPL TAVLTPSLHK  120
SSETSSRGAC TLQNLYYPSV PSAYYEAERV QPFDAGLSLK PNLTAGERGR GRGMRSSSCV  180
STAVEKRRRD TVSFSSEESV MTSTTSFERG GGLKDRKVLN LFV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G424400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224007.11e-162LOB domain-containing protein 39
SwissprotQ9SZE81e-62LBD39_ARATH; LOB domain-containing protein 39
TrEMBLM5XI771e-161M5XI77_PRUPE; Uncharacterized protein
STRINGEMJ252061e-161(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.19e-65LOB domain-containing protein 39