PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G433500.1.p
Common NamePRUPE_ppa026635mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 390aa    MW: 43557.8 Da    PI: 7.6448
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G433500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35251172103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sw e+  +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+
  Prupe.1G433500.1.p  25 FLTKTYQLVDDPATDHIVSWGEDDATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKH 106
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+k++
  Prupe.1G433500.1.p 107 LLCEIHRRKTA 117
                         ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.4E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.05E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MALMMDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDAT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPH  120
QVGFSHHHHH HHNSHSPLGI NGHHHPSFFP FPSRGSISPS DSDEPPNWCD SDSPPLPSPT  180
GGINNHNNNN NNFMSINNAS VTGLAEDNER LRRSNSMLMS ELAHMRKLYN DIIYFVQNHV  240
KPVAPSNSYP SSLLLCNPPP NSMAPAATAT KPSNNFNQLL GYYPAPATNA KQTPHMSTTT  300
HHHVMNSSSP SNTTSKSSSV TILEDQQQPS SNGCKNTKLF GVPLLHSKKR LHPEEYGSNH  360
GTSMMEASKA RLILEKDDLG LHLMPPSAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-212111626131Heat shock factor protein 1
5d5v_B3e-212111626131Heat shock factor protein 1
5d5v_D3e-212111626131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G433500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3768814e-80AK376881.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3143C10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226488.10.0heat stress transcription factor B-4
SwissprotQ9C6351e-112HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLM5XNJ80.0M5XNJ8_PRUPE; Uncharacterized protein
STRINGEMJ276870.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-105heat shock transcription factor B4