PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G434000.1.p
Common NamePRUPE_ppa021226mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 261aa    MW: 28819.6 Da    PI: 8.6945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G434000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08168208954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Prupe.1G434000.1.p 168 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 208
                         699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-13160218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-14163218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-13165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-6169208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.59E-6182213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDIVQLKSEE QMEMMMTMQM DKISELCGAY NDVSDLPPSD HTFSTITTTT TSPNSITSNT  60
SISMPHYTDQ QNPQNIPSPN SQSFLNLPTI PTIPSTISFS NTTNLTDQTS NSSNGFLPSS  120
QKRTSMAAMR EMIFRIAAMQ PIHIDPESVK PPKRRNVKIS KDPQSVAARH RRERISERIR  180
ILQRLVPGGT KMDTASMLDE AIHYVKFLKS QIQTLERAAA NRPTGIGFPV AMSSGSYGLH  240
SVAKAYQASC HENVQHFGDA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G434000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894280.0KP689428.1 Prunus pseudocerasus isolate Unigene7666 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224416.10.0transcription factor HEC1
TrEMBLM5Y1Q50.0M5Y1Q5_PRUPE; Uncharacterized protein
STRINGEMJ256150.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.12e-42bHLH family protein