PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G437800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 194aa    MW: 21928.1 Da    PI: 8.0806
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G437800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.4e-14111190287
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +k+ +ps+ +    l+l ++f+ e+ +k  ++  +tl d +g+++  ++      +r+ l++GWkeF+ a++L egD +vF+l++ 
  Prupe.1G437800.1.p 111 VKTIVPSYISGGFFLCLKRQFCMENLSK--GDEVMTLVDVDGNEYLTRY----LAQRFGLSAGWKEFAFAHDLVEGDALVFQLIRP 190
                         68999*****************999444..44589**************....455689***********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-16105193IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.37E-18105193IPR015300DNA-binding pseudobarrel domain
CDDcd100175.73E-20108191No hitNo description
SMARTSM010192.1E-13110194IPR003340B3 DNA binding domain
PROSITE profilePS5086311.18110194IPR003340B3 DNA binding domain
PfamPF023621.2E-11111190IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAKPKWLYEE SRQQSLEENR KKMAALNLPQ LAQLAHPAPV ELARPRTFEK HLVQVRRSTR  60
VSNHSSPVYK ELAEGFVEPN KRFCSDEARA AALHEAQELV SGLGSDNPTI VKTIVPSYIS  120
GGFFLCLKRQ FCMENLSKGD EVMTLVDVDG NEYLTRYLAQ RFGLSAGWKE FAFAHDLVEG  180
DALVFQLIRP TAFK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G437800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021820265.11e-118B3 domain-containing protein At5g42700-like
RefseqXP_021820267.11e-118B3 domain-containing protein At5g42700-like
TrEMBLA0A251RC541e-143A0A251RC54_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ229611e-110(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-38B3 family protein