PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G437900.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Protein Properties

Length: 234aa MW: 26429.6 Da PI: 10.3836

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G437900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.2	1.3e-17	134	223	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+++ps+v+ +l l +f++eh + ++ +tl de+g+++ + rk++ l++GWk+F+ a++L +gD +vF+l++r+ Prupe.1G437900.1.p 134 FVKTMLPSHVSGGFWLGLQVQFCKEHlpK----GDEVMTLIDEDGNEYPTIYLARKTG----LSGGWKGFAVAHDLVDGDALVFQLIRRTV 216 89**********************543....4458***********656665....***********************9999 PP E..EEEEE- CS B3 90 felvvkvfr 98 f +v ++r Prupe.1G437900.1.p 217 F--KVYILR 223 9..777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.45E-24	128	224	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.5E-21	129	223	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.19E-28	132	223	No hit	No description
Pfam	PF02362	6.6E-15	134	223	IPR003340	B3 DNA binding domain
SMART	SM01019	7.5E-25	134	225	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.491	134	225	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MGKMVMAKSK LSYEESRRQR LEENKKRMEA LNLPQLAQAL KTTSSPKPSP MKRTKPRTVE 60 KQMVVVRRSS RVANLPTPVY KEVVVDRVMI PRKSYSSRHR DLSNRVYASD EARAEAMERA 120 ENLESGLGSD HPIFVKTMLP SHVSGGFWLG LQVQFCKEHL PKGDEVMTLI DEDGNEYPTI 180 YLARKTGLSG GWKGFAVAHD LVDGDALVFQ LIRRTVFKVY ILRVGRPEDG NKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G437900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020422916.1	1e-173	B3 domain-containing protein At5g42700
Swissprot	Q9FMZ4	4e-79	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A251REU1	1e-172	A0A251REU1_PRUPE; Uncharacterized protein
STRING	XP_008220213.1	1e-171	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-75	B3 family protein

Link Out ? help Back to Top
Phytozome	Prupe.1G437900.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]