PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G438000.1.p
Common NamePRUPE_ppb024440mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 223aa    MW: 25353.1 Da    PI: 10.2609
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G438000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.81.7e-17129218198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k +++s+v+   +l lp +f++++  k  ++  ++l de+g ++++ +    ++++  l++GW++F+ a++L +gD +vF+l++ ++f 
  Prupe.1G438000.1.p 129 FVKPMLQSHVTGGFWLGLPIHFCNKNLPK--RDESVILVDEDGDEYQIVY--LANKRG--LSGGWRGFAIAHELVDGDALVFQLIRPKTF- 212
                         89*********************999433..4557***************..555555..9************************97888. PP

                         .EEEEE- CS
                  B3  92 lvvkvfr 98 
                          +v ++r
  Prupe.1G438000.1.p 213 -KVYIIR 218
                         .888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-24123219IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.7E-21124218IPR015300DNA-binding pseudobarrel domain
CDDcd100173.44E-27127218No hitNo description
PfamPF023622.1E-16129218IPR003340B3 DNA binding domain
SMARTSM010192.8E-25129220IPR003340B3 DNA binding domain
PROSITE profilePS5086312.774129220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVAANLSYEE SRRQRMEENK KRMEALNLPQ LAQALKAPSF PKPSPMKRAK PRTVEKQMVV  60
VRRSSRVANL PTPVYKEIAV DPLRMPRRHS TSKHRDFSNR VYASDEARAE ATERAEELES  120
GLGSDHPTFV KPMLQSHVTG GFWLGLPIHF CNKNLPKRDE SVILVDEDGD EYQIVYLANK  180
RGLSGGWRGF AIAHELVDGD ALVFQLIRPK TFKVYIIRVE RT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G438000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007221765.11e-165B3 domain-containing protein At3g19184
SwissprotQ69V361e-79Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLM5XAI51e-164M5XAI5_PRUPE; Uncharacterized protein
STRINGEMJ229641e-165(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-70B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]