PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G451000.2.p
Common NamePRUPE_ppa002998mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CPP
Protein Properties Length: 614aa    MW: 66494.8 Da    PI: 8.4566
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G451000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.41.6e-14141179241
                 TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                         ++k+CnCk+s+Clk+YCeCfaag +C+  C+C++C+N+ +
  Prupe.1G451000.2.p 141 KQKQCNCKNSRCLKLYCECFAAGIYCEG-CNCSNCHNNVD 179
                         89*************************9.********986 PP
2TCR50.15.7e-16225264140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         k++kgC+C+ks ClkkYCeCf+a+  Cse+CkC +CkN e
  Prupe.1G451000.2.p 225 KHNKGCHCRKSGCLKKYCECFQANILCSENCKCMGCKNFE 264
                         589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.7E-17140180IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.925141265IPR005172CRC domain
PfamPF036381.7E-11142177IPR005172CRC domain
SMARTSM011141.3E-19225266IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.9E-12228263IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MEQSETVSQI APKKLARQLD FTTVCRASAN AALPEVQLQL QLQLQLQSPS QAQLSQNSPA  60
KSHVHLQLQS PPPPPVAQPP KQLTPPPAIP QFLARPSPAP AANSRIQHPV HKLSISTSQA  120
SKQESPISRQ RGDGKDGTPK KQKQCNCKNS RCLKLYCECF AAGIYCEGCN CSNCHNNVDN  180
EAARQEAVGL ILERNPNAFR PKIASSPQES RDGREDAGEI QAPGKHNKGC HCRKSGCLKK  240
YCECFQANIL CSENCKCMGC KNFEGSEERR ALHHEDHNTV AYMQQANAAI SGAIGSSGYG  300
TPLVSRKRKS YELYFGTTNQ TTHPIKQPQQ ENHLRPPIAS SSLSSVPTCR TANAAVSRSS  360
KSTYRSPLAD IIQSKNIKDL CSRLVVVSGA AAEALAGNRR RETIDESSTN LSTQEGKECK  420
KEHDVQNSVH DDHLGVNEAD RDESSYSGLN GGDVQNSRPM SPGTLALMCD EQDKMFMAAG  480
LPNGVGSSSP SMTQKSTQEI GCTEVYAEQE RLVLIGFRDF LNHLITRGSI KETMCSPQAK  540
RERVSQKEPV QGGTAKPSPE PRCQKEAYSN GIAKSPVSAN GKMLHPVTTL HPVATVTSGD  600
NDLSLKVGLP IEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-301322741132Protein lin-54 homolog
5fd3_B1e-301322741132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304309SRKRKS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G451000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007222027.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-135TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLM5XCQ80.0M5XCQ8_PRUPE; Uncharacterized protein
STRINGEMJ232260.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-128Tesmin/TSO1-like CXC domain-containing protein