PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.1G456500.1.p

Common Name

PRUPE_ppa025574mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 336aa MW: 37926.3 Da PI: 5.2576

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.1G456500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.2	2.1e-08	31	107	2	79
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 W l+L++ +e + ++ + ++W+ +s+++++ g+ r+ q + kw+ l +yk ik++e+ + s + Prupe.1G456500.1.p 31 WNSTDELLLVNEIAAVEADCLKALSSFQKWKIISQNCSALGVPRTLDQYRRKWDALFLQYKSIKQWESAS-RGGASYW 107 5555666677777777777777888889***************************************985.4444455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-6	31	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MKVQGSQSEL DRSQCGSSSR RSTRSQVAPD WNSTDELLLV NEIAAVEADC LKALSSFQKW 60 KIISQNCSAL GVPRTLDQYR RKWDALFLQY KSIKQWESAS RGGASYWVLE IGRRKQKGLP 120 ENFDNELFRA IDNLVRVRGN QSDTDPDSDP EAEIDAEADV PDVVAEPESK RRRRRSTHQK 180 SCSIENSLED VRWKSLKKPR VEEKPEETHA EEKPQETHAE EKPVGSCLEV IPQKSLAEQK 240 SQKSCAKKHK NSQIKEKAIS IEEQEQIAVM QLHENVELIQ AIVNENADHE AAADVKSTGD 300 PQTDLVRRQG DQVIACLGDI VKTLDQLRQL VQECE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	174	KRRRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.1G456500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007227091.1	0.0	trihelix transcription factor ASR3
TrEMBL	M5Y8E8	0.0	M5Y8E8_PRUPE; Uncharacterized protein
STRING	EMJ28290	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6732	26	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	3e-62	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Prupe.1G456500.1.p
Entrez Gene	18790337