PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G489700.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 127aa    MW: 14590.3 Da    PI: 7.975
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G489700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.62.8e-1021881486
                        T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86
                          l++p  f ++  +k     +  l++     W +k+  rk++++  y+ ++GWke v+++gL+ g+f+v+k++g
  Prupe.1G489700.1.p 21 EKLSIPVVFSRSLHEK----NEALLKSC-QGYWPIKV--RKHGDGllYFEGGGWKELVEQHGLELGEFLVLKHQG 88
                        4599999999888533....24566665.557*****..999999999999*********************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-106101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-10695IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.6868100IPR003340B3 DNA binding domain
CDDcd100172.52E-10999No hitNo description
SMARTSM010197.1E-911100IPR003340B3 DNA binding domain
PfamPF023626.1E-82088IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MAGLTPPPRK FIKFLAPGLH EKLSIPVVFS RSLHEKNEAL LKSCQGYWPI KVRKHGDGLL  60
YFEGGGWKEL VEQHGLELGE FLVLKHQGIK LLLVLLMFSD FEQCDQACVF IIDVYIIFYF  120
IFRQCY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G489700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339373.33e-23B3 domain-containing protein REM8-like
TrEMBLA0A251REZ02e-86A0A251REZ0_PRUPE; Uncharacterized protein
STRINGXP_008339373.11e-22(Malus domestica)
STRINGXP_008368177.11e-22(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14574917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.17e-10B3 family protein