PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G507000.1.p
Common NamePRUPE_ppa003136mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 601aa    MW: 66197.5 Da    PI: 6.7919
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G507000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.24.2e-25131232199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+ltpsd+++ g +++p+ +a+++        +++ +  tl+++d++g +W++++iyr++++r++lt+GW++Fv+ + L +gD+vvF+ 
  Prupe.1G507000.1.p 131 FAKILTPSDANNGGGFSVPRFCADSIfpalnyqAEPPVQ--TLSVTDLHGIVWDFRHIYRGTPRRHLLTTGWSKFVNHKMLVAGDSVVFM- 218
                         89*********************999****985444444..9************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++s++e++v+v+r+
  Prupe.1G507000.1.p 219 -RNSRGEMFVGVRRA 232
                         .669999*****996 PP
2Auxin_resp94.12.3e-31280363183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a+ + +FevvY+P+a++s+Fvvk+e vekal+v +s+GmR+km++etedss+ ++ +Gt ++vs  d+  W++S+Wr+L+
  Prupe.1G507000.1.p 280 AAEMAAAGRPFEVVYYPKAGWSDFVVKAEVVEKALNVFWSAGMRVKMSVETEDSSRMTWfQGTLSSVSIPDNGPWQRSPWRMLQ 363
                         6889999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-35122241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.03E-28125240IPR015300DNA-binding pseudobarrel domain
CDDcd100172.96E-20130231No hitNo description
PfamPF023621.1E-22131232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464131233IPR003340B3 DNA binding domain
SMARTSM010192.7E-19131233IPR003340B3 DNA binding domain
PfamPF065071.5E-28280363IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MPPTPHPPPH HHPHSHSHSP HRPIDPKIWR ACAGNSVQIP ILHSRVYYFP QGHLEQSSSS  60
APLLLSPLVL SKPLILCRIS AVHFLADPTT DEVFAKLLLL PIPNHEPTNR HEPPNDDVFD  120
DADETDKVVS FAKILTPSDA NNGGGFSVPR FCADSIFPAL NYQAEPPVQT LSVTDLHGIV  180
WDFRHIYRGT PRRHLLTTGW SKFVNHKMLV AGDSVVFMRN SRGEMFVGVR RAVRSTVSSD  240
CASRWSSPIG GGATTTMRLK TEDQEGSGRK VMSAEAVVGA AEMAAAGRPF EVVYYPKAGW  300
SDFVVKAEVV EKALNVFWSA GMRVKMSVET EDSSRMTWFQ GTLSSVSIPD NGPWQRSPWR  360
MLQVTWDEPE VLQNAKRVSP WQVDYVASTP SIHTAFPPAK RFRAPMSPGL LTNAEEEFFF  420
PVPGAPNSTM GQSNASLLNY NTFPAGMQGA RQDLYCVSNL SHLLSENTPQ MCPYNSFGNN  480
VVPKLKRVST ELNIGSSQSD ELSLDSQSSV HSFGTELDGN RYCNSTKVGR SSFQLFGKII  540
HMNQPVEGGF DDVGCTEDNG NKGYNATEGV NNQLDLSYSK LLERLDVQYQ RASAVEACSL  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A6e-702738422353Auxin response factor 1
4ldw_A6e-702738422353Auxin response factor 1
4ldw_B6e-702738422353Auxin response factor 1
4ldx_A7e-702738422353Auxin response factor 1
4ldx_B7e-702738422353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G507000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007225689.10.0auxin response factor 17
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLM5XYJ10.0M5XYJ1_PRUPE; Auxin response factor
STRINGEMJ268880.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-170auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]