PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G519100.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 157aa    MW: 17736.7 Da    PI: 8.8579
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G519100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.76.5e-11791491791
                         E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         +lp  f ++ ++kk  + + +   +   sW v+l   ++ ++   +++GW+ Fv+ +gL+ g++vvF+++g++ f+
  Prupe.1G519100.1.p  79 SLPVAFSSSLSEKK-LD-KAV-IKSCLGSWCVRL--GRSVDGvLSFEEGWEVFVNHHGLNIGEMVVFEHKGKMVFT 149
                         56666665554332.22.233.3345579*****..7777776999**********************98877774 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.006169156IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-1277153IPR015300DNA-binding pseudobarrel domain
PfamPF023627.8E-878149IPR003340B3 DNA binding domain
CDDcd100177.31E-979153No hitNo description
SuperFamilySSF1019367.85E-1180154IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.404104156IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MLRVFQVFGS WVQQTTYCIR KSAKQTTIVT SAMQTILMLN ILAHNLQLKV LSVGVFKRLV  60
SQIVIYETFD SINQWEEKSL PVAFSSSLSE KKLDKAVIKS CLGSWCVRLG RSVDGVLSFE  120
EGWEVFVNHH GLNIGEMVVF EHKGKMVFTV VAYESW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G519100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021817287.11e-77B3 domain-containing protein REM8-like isoform X1
TrEMBLA0A251RGH01e-109A0A251RGH0_PRUPE; Uncharacterized protein
STRINGXP_008339452.16e-26(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14574917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.28e-09B3 family protein