PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G523000.1.p
Common NamePRUPE_ppa009419mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 294aa    MW: 33288.8 Da    PI: 5.7891
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G523000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1956109356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++++eq+++Le+ Fe ++++  e++++LA++lgL+ rqV +WFqNrRa++k
  Prupe.1G523000.1.p  56 KKRRLSSEQVKALERNFEVENKLEPERKAKLAEELGLQPRQVAIWFQNRRARWK 109
                         45689************************************************9 PP
2HD-ZIP_I/II129.61.3e-4156147293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         kkrrls+eqvk+LE++Fe e+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlE+dy  Lk++yd lk + ++Le+++++L+e+l+
  Prupe.1G523000.1.p  56 KKRRLSSEQVKALERNFEVENKLEPERKAKLAEELGLQPRQVAIWFQNRRARWKTKQLERDYGILKANYDGLKLNFDSLERQNKALAEKLR 146
                         9**************************************************************************************9997 PP

         HD-ZIP_I/II  93 e 93 
                         +
  Prupe.1G523000.1.p 147 H 147
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.51E-1950113IPR009057Homeodomain-like
PROSITE profilePS5007117.79951111IPR001356Homeobox domain
SMARTSM003897.5E-1854115IPR001356Homeobox domain
PfamPF000465.6E-1756109IPR001356Homeobox domain
CDDcd000863.14E-1656112No hitNo description
Gene3DG3DSA:1.10.10.605.3E-2158117IPR009057Homeodomain-like
PRINTSPR000313.4E-68291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000313.4E-691107IPR000047Helix-turn-helix motif
PfamPF021831.2E-15111152IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MKRFSSSSDS LGVLVSNFPP KEEEKHGKDN YGYSKEFQAM LDSLDQEDCG EEMTGKKRRL  60
SSEQVKALER NFEVENKLEP ERKAKLAEEL GLQPRQVAIW FQNRRARWKT KQLERDYGIL  120
KANYDGLKLN FDSLERQNKA LAEKLRHLKA KLCRDTAESN GSAKEESPIS MCKSSIMEQS  180
RHQDFSDNGD NAEVNLFKNL KSKDGSSDSD SNGVMKEESN GNSSLGYNNG HSSLSSNSMV  240
NWFQLSDSRS VAGKGFQTQL VRMEEQSLFS TEESCNFFSV DQAPTLHWYS AEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.66000.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G523000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007225750.10.0homeobox-leucine zipper protein ATHB-6
TrEMBLM5XLY10.0M5XLY1_PRUPE; Uncharacterized protein
STRINGEMJ269490.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.11e-52homeobox protein 6