PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G531100.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 28756.7 Da    PI: 5.8394
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G531100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.35.4e-251161151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+i+n   rqvtfskRr gilKKA ELSvLC+ evav+ifs tgkl++yss
  Prupe.1G531100.2.p 11 KKIDNLPARQVTFSKRRRGILKKAAELSVLCESEVAVVIFSATGKLFDYSS 61
                        689999*******************************************96 PP
2K-box56.21.5e-19881711497
               K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                          +  ++++ +L ke+e+  r++R+++GedLe+L++ eLq+Leq ++ sl ++ ++K+el++++i  l++k  el e+nk+Lr++
  Prupe.1G531100.2.p  88 LQPEKENHIRLSKELEEKSRQLRQMKGEDLEELNFDELQKLEQLVDASLGRVIETKDELIMSEIMALKRKRAELVEANKQLRQR 171
                         5667788899************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-34362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.754363IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-24525IPR002100Transcription factor, MADS-box
CDDcd002655.95E-35572No hitNo description
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-28576IPR002100Transcription factor, MADS-box
PfamPF003193.2E-211259IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-242540IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-244061IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.99888178IPR002487Transcription factor, K-box
PfamPF014868.3E-1791171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MKMMREKIKI KKIDNLPARQ VTFSKRRRGI LKKAAELSVL CESEVAVVIF SATGKLFDYS  60
SSSMKDVIER YQAHINGAEK FDEPSIELQP EKENHIRLSK ELEEKSRQLR QMKGEDLEEL  120
NFDELQKLEQ LVDASLGRVI ETKDELIMSE IMALKRKRAE LVEANKQLRQ RASNYHNHML  180
SRGNIGPALM EPERLNNNIG GGGEEEGMSS ESATSTTCNS APSLSLEDDS DDVTLSLKLG  240
PECGEKDNSL TTKKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-18374172MEF2C
5f28_B4e-18374172MEF2C
5f28_C4e-18374172MEF2C
5f28_D4e-18374172MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.1G531100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8632530.0DQ863253.2 Prunus persica dam1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419189.10.0MADS-box protein JOINTLESS isoform X1
SwissprotQ9FUY65e-68JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A251RHA40.0A0A251RHA4_PRUPE; Uncharacterized protein
STRINGXP_008219269.11e-142(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.13e-58AGAMOUS-like 24
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]